Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K04
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical
           protein F43C11.9 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 54  LANR*IYLDNPLRIFGDKPVSGALNTLA 137
           LA   I+LD PL+I G K +   LNT+A
Sbjct: 119 LAKHYIFLDFPLKIIGIKKMLDRLNTMA 146


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 211 CIYSVNYIFNELXVRHD 161
           C+++V YIFN++   HD
Sbjct: 20  CLFTVGYIFNDINSFHD 36


>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 211 CIYSVNYIFNELXVRHD 161
           C+++V YIFN++   HD
Sbjct: 20  CLFTVGYIFNDINSFHD 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,222,864
Number of Sequences: 27780
Number of extensions: 60666
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)