Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K04
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51880.1 68414.m05848 leucine-rich repeat protein kinase, put...    31   0.19 
At5g03090.1 68418.m00257 hypothetical protein                          27   2.4  

>At1g51880.1 68414.m05848 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 171 FDMIYRPGRPKTLKYLE-LH*QVYLRRFSKDYPSISSGLLVNTCN 40
           F  ++    P  ++Y E +H +V++R+F     SIS+ LLV+T N
Sbjct: 194 FARVFFSATPTFIRYDEDIHDRVWVRQFGNGLKSISTDLLVDTSN 238


>At5g03090.1 68418.m00257 hypothetical protein 
          Length = 97

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 26  FLTSPLHVLTSKPLDILG*SFENLRR*TCQW 118
           FL  PLH  TS P+ +LG     LRR   +W
Sbjct: 30  FLLQPLHGGTSPPMSLLGGGGSVLRRYRGRW 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,169
Number of Sequences: 28952
Number of extensions: 57696
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)