Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K02
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 106   1e-23
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              74   9e-14
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   61   6e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              61   9e-10
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            45   5e-05
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   5e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                43   2e-04
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      36   0.021
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_13166| Best HMM Match : Ank (HMM E-Value=2.9e-05)                   31   1.0  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                28   5.6  
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  27   9.7  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  106 bits (255), Expect = 1e-23
 Identities = 50/71 (70%), Positives = 61/71 (85%)
 Frame = +3

Query: 426 GVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIK 605
           GVVVLAGALLE A  LLD GIHPIRIADGYE+AA +AL H+DS+++ FPV+K+  E+LI+
Sbjct: 106 GVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNFPVDKDNKESLIQ 165

Query: 606 VAMTTLGSKVV 638
            AMTTLGSK+V
Sbjct: 166 TAMTTLGSKIV 176



 Score =  101 bits (243), Expect = 4e-22
 Identities = 47/68 (69%), Positives = 60/68 (88%)
 Frame = +2

Query: 206 KSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQL 385
           +SHI AAR +AS L+TSLGP+G+DK+MVS DG+VTVTNDGATIL MM+V+HQI KL+V+L
Sbjct: 33  QSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVEL 92

Query: 386 AXSQXDEI 409
           + SQ +EI
Sbjct: 93  SKSQDNEI 100


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 38/88 (43%), Positives = 54/88 (61%)
 Frame = +2

Query: 143 RPFIILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTND 322
           +P IIL  +       G   + S+I A + IA  +RT+LGPRG+DKL+V   G  T++ND
Sbjct: 638 QPGIILLKEGTDAS-QGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISND 696

Query: 323 GATILKMMDVEHQIGKLLVQLAXSQXDE 406
           GATI+ ++D+ H   K LV +A SQ  E
Sbjct: 697 GATIINLLDIVHPAAKTLVDIAKSQDAE 724


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +2

Query: 152 IILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVS--SDGDVTVTNDG 325
           + + +Q  ++    T  + S + A   I   ++++LGP+G+DK++ S   +G++ VTNDG
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIA-IGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDG 64

Query: 326 ATILKMMDVEHQIGKLLVQLAXSQXDEI 409
           ATILK + +++   K+LV+L+  Q DE+
Sbjct: 65  ATILKSIGIDNPAAKILVELSKVQDDEV 92



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVN-KNTXENLIK 605
           V VL   LL++A  L+   IHP  I  G+  +   A   L++ +     + +   E+L+ 
Sbjct: 99  VTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMN 158

Query: 606 VAMTTLGSKVV 638
           +A TTL SK++
Sbjct: 159 IARTTLSSKIL 169


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
 Frame = +2

Query: 209 SHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATI--LKMMDVE-HQIGKLLV 379
           ++I AA+ +A  +RTSLGP+G+DK++   +GDVT+TNDGATI  +  +D+E   +GK +V
Sbjct: 28  TNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPVGKPVV 87

Query: 380 QLA 388
             A
Sbjct: 88  PAA 90


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +2

Query: 215 IQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAXS 394
           +Q  +     L+ S GP GLD ++ SS G++ +TN G+ IL+ + + +   +++V+ A S
Sbjct: 6   LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARS 65


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/68 (36%), Positives = 43/68 (63%)
 Frame = +3

Query: 432 VVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIKVA 611
           V++ G LL+QA   + +G+HP  + +G+E+A   AL  L+ V  +  ++++T   LI VA
Sbjct: 198 VMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKALEVLEEVKVSREMDRDT---LINVA 254

Query: 612 MTTLGSKV 635
            T+L +KV
Sbjct: 255 KTSLRTKV 262



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 200 AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDG 301
           A+  +I AAR +   L+T+LGP+G  K++    G
Sbjct: 19  ALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
 Frame = +2

Query: 140 GRPFIILRDQDXQKRLT-GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVT 316
           G  F   R Q+  K L  G +A  + +Q    +A  +  +LGP+G + ++  S G   +T
Sbjct: 47  GEGFSTSRFQNSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKIT 106

Query: 317 NDGATILKMMDVE---HQIGKLLVQLAXSQXDE 406
            DG T+ K ++++     IG  LVQ   +  +E
Sbjct: 107 KDGVTVAKAIELKDKYQNIGARLVQDVANNTNE 139


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVN-KNTXENLIK 605
           V VLA  LL++A  L+   IHP  I  G+  +   A   L++ +     + +   ++L+ 
Sbjct: 17  VTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMN 76

Query: 606 VAMTTLGSKVV 638
           +A TTL SK++
Sbjct: 77  IARTTLSSKIL 87


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +2

Query: 311 VTNDGATILKMMDVEHQIGKLLVQLAXSQXDEI 409
           +TNDG  IL+ + V+H   K +++++ +Q +E+
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEV 33



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMA 524
           V++LAG  +  A   L++ +HP +I   Y +A
Sbjct: 40  VIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 71


>SB_13166| Best HMM Match : Ank (HMM E-Value=2.9e-05)
          Length = 299

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 432 VVLAGALLEQASNLLDKGIHP--IRIADG-YEMAAALALTHLDSVSEAFPVNKNTXENLI 602
           + +AGAL+  + N+   G+ P  +++ DG     AAL+L H+D +  AF  + N    L 
Sbjct: 83  IEMAGALMFVSGNI---GLWPASMKLVDGGVSTQAALSLRHVDRIVSAFSAHGNLRNTLS 139

Query: 603 KVAMTTLGSKV 635
            V   T    +
Sbjct: 140 GVCYLTCAQHI 150


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 596 IFXGILVDWESFTDAVKMGQCQGGSHLITIGYT 498
           +F GIL+DW ++ D +    C+        GYT
Sbjct: 124 VFSGILIDWANWQDYINSLACRCARAAYKKGYT 156


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMA 524
           V++LAG  +  A   L++ +HP +I   Y +A
Sbjct: 237 VIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268


>SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 318 FVTVTSPSDDTISLSRPRGPRDVRRVLAI 232
           F T+++PS  TIS      P+D RRV AI
Sbjct: 121 FSTISNPSKTTISRVNISTPQDFRRVSAI 149


>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 QKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATI 334
           Q+ +  TD ++S    A+      R    PR  D+L + +DG V     GAT+
Sbjct: 458 QEPIPWTDELRSSFNKAQSALFKNRAITLPRPDDQLWIVTDGSVRKPGIGATL 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,098
Number of Sequences: 59808
Number of extensions: 395185
Number of successful extensions: 1048
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)