Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K02
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 126 1e-29
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 90 1e-18
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 83 2e-16
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 77 1e-14
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 72 4e-13
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 71 5e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 71 9e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 66 2e-11
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 58 4e-09
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 55 5e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 55 5e-08
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 39 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 39 0.003
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 39 0.003
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 39 0.003
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 36 0.030
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 36 0.030
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 36 0.030
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 35 0.040
At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.4
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 126 bits (304), Expect = 1e-29
Identities = 57/97 (58%), Positives = 79/97 (81%)
Frame = +2
Query: 119 SVAFDEYGRPFIILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSD 298
++AFDE+GRPFIILR+QD + RL G DA K++I A + +A LR+SLGP+G+DK++ D
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPD 61
Query: 299 GDVTVTNDGATILKMMDVEHQIGKLLVQLAXSQXDEI 409
GD+T+TNDGATIL+ MDV++QI KL+V+L+ SQ EI
Sbjct: 62 GDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEI 98
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/71 (57%), Positives = 55/71 (77%)
Frame = +3
Query: 426 GVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIK 605
GVVV+AGALLEQA LD+GIHPIRIA+GYEMA+ +A+ HL+ +++ F + N E L++
Sbjct: 104 GVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQ 163
Query: 606 VAMTTLGSKVV 638
MTTL SK+V
Sbjct: 164 TCMTTLSSKIV 174
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/71 (57%), Positives = 55/71 (77%)
Frame = +3
Query: 426 GVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIK 605
GVVV+AGALLEQA LD+GIHPIRIA+GYEMA+ +A+ HL+ +++ F + N E L++
Sbjct: 28 GVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQ 87
Query: 606 VAMTTLGSKVV 638
MTTL SK+V
Sbjct: 88 TCMTTLSSKIV 98
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/76 (48%), Positives = 55/76 (72%)
Frame = +2
Query: 182 RLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQ 361
R +G D ++ A + +++ ++TSLGP GLDK++V GDVT+TNDGATIL+M++VEH
Sbjct: 14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHP 73
Query: 362 IGKLLVQLAXSQXDEI 409
K+LV+LA Q E+
Sbjct: 74 AAKVLVELAELQDREV 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +3
Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIKV 608
VV++A LL++A++L+ IHP I GY +A + +++ V K LI
Sbjct: 96 VVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE-KLVTKVEKLGKVPLINC 154
Query: 609 AMTTLGSKVV 638
A T++ SK++
Sbjct: 155 AKTSMSSKLI 164
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +2
Query: 191 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGK 370
G + S+I A + +RT+LGPRG+DKL+ G VT++NDGATI+K++D+ H K
Sbjct: 21 GKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAK 80
Query: 371 LLVQLAXSQXDEI 409
+LV +A SQ E+
Sbjct: 81 ILVDIAKSQDSEV 93
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/54 (57%), Positives = 44/54 (81%)
Frame = +2
Query: 119 SVAFDEYGRPFIILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDK 280
++AFDE+GRPFIILR+QD + RL G DA K++I A + +A LR+SLGP+G++K
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/88 (36%), Positives = 57/88 (64%)
Frame = +2
Query: 146 PFIILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDG 325
P ++L D KR +G+ +IQA++ +A +RT+LGPR + K+++ + G + VTNDG
Sbjct: 4 PVLVLSDS--LKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDG 61
Query: 326 ATILKMMDVEHQIGKLLVQLAXSQXDEI 409
IL+ +DV H K +++L+ +Q +E+
Sbjct: 62 NAILRELDVAHPAAKSMIELSRTQDEEV 89
Score = 35.1 bits (77), Expect = 0.040
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIKV 608
V+VLAG +L A L+K HP I Y A ++ LD + A ++ N ++ +
Sbjct: 96 VIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKI--AMSIDINDRSQVLGL 153
Query: 609 AMTTLGSK 632
+ +G+K
Sbjct: 154 VKSCIGTK 161
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/63 (47%), Positives = 49/63 (77%)
Frame = +2
Query: 209 SHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLA 388
++I +AR ++ +RTSLGP+G+DK++ +++G+V +TNDGATIL M+V K+LV+L+
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 389 XSQ 397
SQ
Sbjct: 92 KSQ 94
Score = 54.8 bits (126), Expect = 5e-08
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +3
Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIKV 608
VVV+AGALL++ +LL GIHP I+D A A+ L ++ A PV ++L+K
Sbjct: 105 VVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAM--AVPVELTDRDSLVKS 162
Query: 609 AMTTLGSKVV 638
A T+L SKVV
Sbjct: 163 ASTSLNSKVV 172
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/82 (36%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +2
Query: 167 QDXQKRLTGTD-AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKM 343
++ + L+G D A+ +I+A +++++ RTSLGP G++K++++ + VTND ATI+
Sbjct: 16 KEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNE 75
Query: 344 MDVEHQIGKLLVQLAXSQXDEI 409
++++H KLLV A +Q +EI
Sbjct: 76 LEIQHPAAKLLVLAAKAQQEEI 97
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 432 VVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSE 563
+ AG LL+ A L+ G+HP I GY A + A+ L+ + E
Sbjct: 105 ISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQLVE 148
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 167 QDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGD--VTVTNDGATILK 340
+D G A + A I+ ++++LGP+G+DK++ S+ VTVTNDGATILK
Sbjct: 8 KDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILK 67
Query: 341 MMDVEHQIGKLLVQLAXSQXDEI 409
+ +++ K+LV ++ Q DE+
Sbjct: 68 SLHIDNPAAKVLVDISKVQDDEV 90
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 VVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTH-LDSVSEAFPVNKNTXENLIK 605
VVVLAG LL +A L+ IHP+ I GY MA+ A L V + + +L+K
Sbjct: 97 VVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLK 156
Query: 606 VAMTTLGSKVV 638
+AMTTL SK++
Sbjct: 157 IAMTTLCSKIL 167
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +2
Query: 185 LTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 364
L + A+ I AA+ + L+++LGP+G K++V GD+ +T DG T+LK M +++
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPT 72
Query: 365 GKLLVQLAXSQXD 403
++ + A +Q D
Sbjct: 73 AIMIARTAVAQDD 85
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 432 VVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIK-V 608
V+ G L++Q+ +D+G+HP + DG+E+A L LD+ + + ++K V
Sbjct: 95 VIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEVDKEILKMV 154
Query: 609 AMTTLGSKV 635
A TTL +K+
Sbjct: 155 ARTTLRTKL 163
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +2
Query: 185 LTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 364
L + A+ I AA+ + L+++LGP+G K++V GD+ +T DG T+LK M +++
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPT 72
Query: 365 GKLLVQLAXSQXD 403
++ + A +Q D
Sbjct: 73 AIMIARTAVAQDD 85
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 432 VVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVSEAFPVNKNTXENLIK-V 608
V+ G L++Q+ +D+G+HP + DG+E+A L LD+ + + ++K V
Sbjct: 95 VIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMV 154
Query: 609 AMTTLGSKV 635
A TTL +K+
Sbjct: 155 ARTTLRTKL 163
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 200 AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQIGK 370
AIK ++A + +LGP+G + ++ S G + NDG T+ + +++E IG
Sbjct: 63 AIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGA 122
Query: 371 LLVQLAXSQXDEI 409
LV+ A S+ +++
Sbjct: 123 KLVRQAASKTNDL 135
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 191 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQ 361
G A + +Q ++A ++ ++GP+G + ++ SS G +T DG T+ K + +
Sbjct: 39 GIGARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKN 98
Query: 362 IGKLLVQLAXSQXDEI 409
IG LV+ S +++
Sbjct: 99 IGAELVKQVASATNKV 114
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +2
Query: 143 RPFIILRDQDXQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTND 322
RP I+ ++ GT I+ ++A + +LGP+G + ++ S G + ND
Sbjct: 45 RPAIVCAAKELHFNKDGT-TIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVND 103
Query: 323 GATILKMMDVE---HQIGKLLVQLAXSQXDEI 409
G T+ + +++E IG LV+ A ++ +++
Sbjct: 104 GVTVAREVELEDPVENIGAKLVRQAAAKTNDL 135
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 200 AIKSHIQA-ARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQIG 367
++ +QA A +A L +LGP+G + ++ + G + NDG T+LK +++E +G
Sbjct: 50 SVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVG 109
Query: 368 KLLVQLAXSQXDEI 409
LV+ A ++ +++
Sbjct: 110 VKLVRQAGAKTNDL 123
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 191 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 364
G +A ++ +A ++ ++GP+G + ++ S G VT DG T+ K ++ + +I
Sbjct: 40 GVEARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRI 97
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 230 QIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQIGKLLVQLAXSQX 400
++A + +LGP+G + ++ S G + NDG T+ + +++E IG LV+ A ++
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 401 DEI 409
+++
Sbjct: 137 NDL 139
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 230 QIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQIGKLLVQLAXSQX 400
++A + +LGP+G + ++ S G + NDG T+ + +++E IG LV+ A ++
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 401 DEI 409
+++
Sbjct: 137 NDL 139
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 191 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 364
G +A ++ +A ++ ++GP+G + ++ S G VT DG T+ K ++ + +I
Sbjct: 39 GVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKI 96
>At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase [Citrus
unshiu][gi:4126403], leucoanthocyanidin dioxygenase
[Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 371
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = +2
Query: 59 YFHLSFVHYLNREKWPXFPGSV--AFDEYGRPFIILRDQDXQKRLTGTDAIKSHIQAA-- 226
+ HL H + KWP FP ++ DEYG + L + + T + Q A
Sbjct: 157 FLHLLPHHLKDFNKWPSFPPTIREVIDEYGEELVKLSGRIMRVLSTNLGLKEDKFQEAFG 216
Query: 227 -RQIASTLRTSLGPR 268
I + LR + P+
Sbjct: 217 GENIGACLRVNYYPK 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,516,574
Number of Sequences: 28952
Number of extensions: 268650
Number of successful extensions: 631
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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