Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J24
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_295| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.4  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)           28   5.7  
SB_5911| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011)            28   5.7  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 28   5.7  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)    28   7.5  
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)                 28   7.5  
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        28   7.5  
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)                   28   7.5  
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)             28   7.5  
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)                  27   9.9  

>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 152 DVASYRXIALSSVLTKVAEHLVKNRL 75
           D A+YR IAL+SV  KV EH+V + +
Sbjct: 237 DPANYRPIALTSVTCKVMEHIVYHHI 262


>SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 152 DVASYRXIALSSVLTKVAEHLV 87
           D A+YR IAL+SV  KV EH+V
Sbjct: 703 DPANYRPIALTSVTCKVMEHIV 724


>SB_295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 452 HWCQWCHNQT 481
           HWCQWCH  T
Sbjct: 65  HWCQWCHGAT 74


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 152 DVASYRXIALSSVLTKVAEHLV 87
           D  +YR IAL+SV  KV EH+V
Sbjct: 305 DPVNYRPIALTSVTCKVMEHIV 326


>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
          Length = 980

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 352 LTYQFVLQILLXXIXGTPHHXLLAVIISRLSYPXXLDALLIKKREPRV 209
           L YQF+ +IL      TP H L  ++ ++ +    L ++ ++K+  R+
Sbjct: 317 LQYQFLSEILKWRAQATPDHVLYTLLNTKGTVSSALTSIQLQKKADRL 364


>SB_5911| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -3

Query: 482 MFGCGTTDTNGVHLVEI-----LDLQNLCLLNTGSPTRRT 378
           ++GCGT + NG  L +      L+L+N+  L   SP  RT
Sbjct: 100 VYGCGTMNNNGERLADFCLNNDLELENIHKLTWRSPDGRT 139


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 513 SDPANYRHISLTCIASKVLEHIIHSHV 539


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 635 SDPANYRPISLTCIASKVLEHIIHSHV 661


>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
          Length = 618

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLV-KNRLE 72
           +D  +YR ++L++VL K+ EH++ KN +E
Sbjct: 292 HDPCNYRPVSLTTVLCKLMEHVIYKNIME 320


>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
          Length = 325

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLV-KNRLE 72
           +D  +YR ++L++VL K+ EH++ KN +E
Sbjct: 110 HDPCNYRPVSLTTVLCKLMEHVIYKNIME 138


>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 393

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLV-KNRLE 72
           +D  +YR ++L++VL K+ EH++ KN +E
Sbjct: 110 HDPCNYRPVSLTTVLCKLMEHVIYKNIME 138


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 357 SDPANYRPISLTCIASKVLEHIIHSHV 383


>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
          Length = 863

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 474 SDPANYRPISLTCIASKVLEHIIHSHV 500


>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLV-KNRLE 72
           +D  +YR ++L++VL K+ EH++ KN +E
Sbjct: 202 HDPCNYRPVSLTTVLCKLMEHVIYKNIME 230


>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 581

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 147 SDPANYRPISLTCIASKVLEHIIHSHV 173


>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 423

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLV-KNRLE 72
           +D  +YR ++L++VL K+ EH++ KN +E
Sbjct: 110 HDPCNYRPVSLTTVLCKLMEHVIYKNIME 138


>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 666

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 232 SDPANYRPISLTCIASKVLEHIIHSHV 258


>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 546

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 165 SDPANYRPISLTCIASKVLEHIIHSHV 191


>SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRL 75
           +D A+YR I+L+ + +KV EH++ + +
Sbjct: 279 SDPANYRPISLTCIASKVLEHIIHSHV 305


>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -3

Query: 143 SYRXIALSSVLTKVAEHLVKNRL 75
           +YR I+ +SV+ K+ EH+V +R+
Sbjct: 287 NYRQISFTSVICKILEHIVCSRI 309


>SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 161 RINDVASYRXIALSSVLTKVAEHLVKNRL 75
           R  D  +YR ++L+ ++ K+ EH+V + L
Sbjct: 78  RATDTENYRPVSLTCIVCKLLEHIVYSNL 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,465
Number of Sequences: 59808
Number of extensions: 273791
Number of successful extensions: 639
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)