Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J24
(649 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 47 2e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 45 8e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.063
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 35 0.083
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 35 0.083
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 35 0.083
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 35 0.083
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 35 0.11
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 33 0.25
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 33 0.44
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 30 3.1
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 29 7.2
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAX 318
N H +G TT+ G +D +L LLN SPT + N + +DL++C+P LA
Sbjct: 133 NGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTY-THIDLTLCSPILAP 191
Query: 317 XHXWYTSSXTFGSDHF 270
W + GSDHF
Sbjct: 192 HAKWKILNDLHGSDHF 207
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 45.2 bits (102), Expect = 8e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAX 318
N ++G T+T G + ++ +L +LN GSPT + N + +D+S+ +P +A
Sbjct: 137 NSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTF-THIDISLISPQIAH 195
Query: 317 XHXWYTSSXTFGSDHF 270
W S GSDHF
Sbjct: 196 MCSWSISDNLHGSDHF 211
Score = 33.1 bits (72), Expect = 0.33
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 155 NDVASYRXIALSSVLTKVAEHLVKNRLEWF 66
+D+ SYR I+L S L K E ++ RL WF
Sbjct: 508 SDINSYRPISLLSCLGKTLEKIIAQRLTWF 537
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 35.5 bits (78), Expect = 0.063
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L + + ++ ++ TGS T K PSA+D SIC L
Sbjct: 167 NAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRL 225
Query: 323 AXXHXWYTSSXTFGSDH 273
+SS SDH
Sbjct: 226 GRYEKRISSSAHLSSDH 242
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 35.1 bits (77), Expect = 0.083
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 39 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 97
Query: 323 AXXHXWYTSSXTFGSDH 273
+SS SDH
Sbjct: 98 GRLEKRISSSADLSSDH 114
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 158 INDVASYRXIALSSVLTKVAEHLVKNRL 75
+ND SYR I+L S L+K+ E L+ RL
Sbjct: 436 VNDPKSYRPISLLSGLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.1 bits (77), Expect = 0.083
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 323 AXXHXWYTSSXTFGSDH 273
+SS SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 158 INDVASYRXIALSSVLTKVAEHLVKNRL 75
+ND SYR I+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 35.1 bits (77), Expect = 0.083
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 117 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 175
Query: 323 AXXHXWYTSSXTFGSDH 273
+SS SDH
Sbjct: 176 GRLEKRISSSADLSSDH 192
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 158 INDVASYRXIALSSVLTKVAEHLVKNRL 75
+ND SYR I+L S L+K+ E L+ RL
Sbjct: 514 VNDPKSYRPISLLSGLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.1 bits (77), Expect = 0.083
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 323 AXXHXWYTSSXTFGSDH 273
+SS SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 158 INDVASYRXIALSSVLTKVAEHLVKNRL 75
+ND SYR I+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSI 339
N H ++G G L E L + +L TGSPTR P+ PS +D ++
Sbjct: 140 NARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV 193
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 33.5 bits (73), Expect = 0.25
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 323 AXXHXWYTSSXTFGSDH 273
+S SDH
Sbjct: 214 GRFEKRISSGADLSSDH 230
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 32.7 bits (71), Expect = 0.44
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 324
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 323 AXXHXWYTSSXTFGSDH 273
+S SDH
Sbjct: 214 GRLEKRISSVADLSSDH 230
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 158 INDVASYRXIALSSVLTKVAEHLVKNRL 75
+ND SYR I+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -3
Query: 497 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKP-NEKPSAVDLSICTPDLA 321
N H ++G G ++ G+ L ++ + L TG PTR P +D ++ T +
Sbjct: 139 NASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFAL-TKGVL 197
Query: 320 XXHXWYTSSXTFGSDH 273
H ++ SDH
Sbjct: 198 GIHANISAVVELSSDH 213
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 152 DVASYRXIALSSVLTKVAEHLVKNRL 75
DV SYR I+L L K+ E L+ NRL
Sbjct: 313 DVDSYRPISLLPSLGKIMERLILNRL 338
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,514,123
Number of Sequences: 53049
Number of extensions: 393852
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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