Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J23
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      106   2e-23
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                40   0.002
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 38   0.009
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       35   0.065
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             28   7.5  
SB_3635| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)                   27   9.9  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  106 bits (254), Expect = 2e-23
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
 Frame = +3

Query: 84  VETISPGDESTYPKS-GQTVXVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 260
           +E +S  ++ T     G T+ +HYTG L NG KFDSS DRGK F F +GK  VI+GW++G
Sbjct: 29  IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88

Query: 261 VAXMSVXERAKLTCSPDYAYGQQGHPXVIPPNSTLIFDVXLLRLE*IQFVTKNYYNII 434
           +  M + E+ KLT  P  AYG+ G    IPP++TL  DV L+ ++  +    N + +I
Sbjct: 89  LLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
 Frame = +3

Query: 87  ETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 257
           ET  P D     K G  V VHYTG + +G  FD++RD  K   PF+F IG   VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163

Query: 258 GVAXMSVXERAKLTCSPDYAYGQQGHPXVIPPNSTLIFDVXLLRLE 395
           GV  M V ++ K+   P  AYG++G   V P N  L        LE
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDV-PGNLDLTNTTLTYNLE 208


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 123 KSGQTVXVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 248
           ++G  V V YTG L      GK FDS+    K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +3

Query: 75   GVTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 230
            GV    +S G  +     G TV V Y G   NG++FDS+   G PF+F +G+
Sbjct: 873  GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 174 KKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAXMSVXERAKLTCSPDYAYG 323
           ++ D SR  G+PF+  +GK   +  W+E +  M V E A+ TC      G
Sbjct: 110 QELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTCDKSVVAG 159


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +3

Query: 285 RAKLTCSPDYA----YGQQGHPXVIPPNSTLIFDVXLLRLE*IQFVTKNYYNIIVMSIAL 452
           R   +CSP  A    + Q+G   ++ PNST +F + L R +  QF       +I  S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332

Query: 453 *NSKSQLITLFFITYSH 503
               + L+   + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/65 (21%), Positives = 33/65 (50%)
 Frame = +2

Query: 365  YFRCXTSTSRINTICNQKLLQHHCYVNCPLKL*VTAYHIIFYHILSLKSLYQHYVYLXWK 544
            Y+R   + + ++++  +   ++H Y+  PL++ V+ YH      L + S Y  Y+ +  +
Sbjct: 3573 YYRASLACNPVSSVYYRASSEYHRYIIVPLRI-VSEYHRYIIVPLRIVSEYHRYIIVPLR 3631

Query: 545  YIYTY 559
             +  Y
Sbjct: 3632 IVSEY 3636


>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 488 YHILSLKSLYQHYVYLXWKYIYTYAIRKNF 577
           +HI+ L    +H+    W ++Y Y  R++F
Sbjct: 100 FHIIDLNQTIKHFRVRLWYFVYLYGNREHF 129



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 488 YHILSLKSLYQHYVYLXWKYIYTYAIRKNF 577
           +HI+ L    +H+    W ++Y Y  R++F
Sbjct: 129 FHIIGLNQTIKHFRVRLWYFVYLYGNREHF 158


>SB_21032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 523 LCVFIXEIYIYLCYP*EFHIIRK*XMVRLIMNLXISIYLLT 645
           LC    + YI +C+P ++HI  +   + LI+     + +LT
Sbjct: 123 LCGMTLDRYIAICHPMKYHIFTQKRTIGLIIGTSWGLAILT 163


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 111 STYPKSGQTVXVHYTGTLTNGKKFD 185
           + YPKSGQT  +     + NG +FD
Sbjct: 36  TAYPKSGQTWTIEIVKQVLNGGEFD 60


>SB_3635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 523 LCVFIXEIYIYLCYP*EFHIIRK*XMVRLIMNLXISIYLLT 645
           LC    + YI +C+P ++HI  +   + LI+     + +LT
Sbjct: 173 LCGMTLDRYIAICHPMKYHIFTQKRTIGLIIGTSWGLAILT 213


>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
          Length = 276

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVXVHYTGTLTNGKKFDSSR 194
           +T++  S  D+ST P +G TV    +GT T  +   SS+
Sbjct: 178 LTMQLTSLADDSTGPLTGYTVKYRTSGTWTTREILSSSQ 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,425
Number of Sequences: 59808
Number of extensions: 336415
Number of successful extensions: 740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)