Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J19
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 180 1e-46
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 177 1e-45
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.4
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 26 5.4
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.2
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 25 7.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 180 bits (439), Expect = 1e-46
Identities = 89/168 (52%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Frame = +2
Query: 152 SVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSSW 331
+ +E+ V AKLAEQAERY+ M M V T EL EERNLLSVAY NV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 332 RVISSIEQKTE--GSERKQQMAKXYRVKVQXELXXICYDVLGLLDKHLIPKASNPQSKVF 505
R++SSIEQK E G+ + ++ K YR K++ EL IC D+L +L+KHLIP A++ +SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 506 YLKMKXDYYRYLAQVATGXTXHSVVXDSQKAYQDAFEISKAKMQPTHP 649
Y KMK DYYRYLA+ A G S + Y+ A EI+ A++ PTHP
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHP 170
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 177 bits (430), Expect = 1e-45
Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 2/169 (1%)
Frame = +2
Query: 149 MSVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSS 328
MS +E V AKLAEQAERY++M M +V + +L EERNLLSVAY N++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 329 WRVISSIEQKTE--GSERKQQMAKXYRVKVQXELXXICYDVLGLLDKHLIPKASNPQSKV 502
WR+ISSIEQK E G+ R+ + K YR K++ EL IC+DVL +L+KHLIP A+ +SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 503 FYLKMKXDYYRYLAQVATGXTXHSVVXDSQKAYQDAFEISKAKMQPTHP 649
FY KMK DYYRYLA+ G S +AY+ A +I+ A++ PT P
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDP 169
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 39 LFSARXKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKL 203
LFS + ILC L+L+V + ++ S+ + F +PR K N WPN+
Sbjct: 38 LFSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNET 97
Query: 204 SDM 212
S +
Sbjct: 98 SHL 100
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +3
Query: 39 LFSARXKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 218
LF + +I + I + PS + + P P+T W V N +SD
Sbjct: 2226 LFQSCSPIIRICKKVAHIQYDPSKDEVGAFAADYTPLGPNTFLAWGRVDNTVQLISDQLD 2285
Query: 219 WRP 227
+P
Sbjct: 2286 KQP 2288
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 131 PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXN 304
P+ S TMS E + R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 305 VVGARRSSWRVISSIEQ 355
+R+ + +E+
Sbjct: 3057 EAYQAELFYRLSNCVEK 3073
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 455 LDKHLIPKA--SNPQSKVFYLKMKXDYYRYLAQ 547
+++H + K+ S P S+ YLK+ YR+LA+
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLAR 37
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 96 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 218
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 455 LDKHLIPKA--SNPQSKVFYLKMKXDYYRYLAQ 547
+++H + K+ S P S+ YLK+ YR+LA+
Sbjct: 5 IERHHVRKSQRSKPASENVYLKLLVKLYRFLAR 37
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 111 KGISELVLFHRPRCPSTRKNWCNVPNW 191
+G+ + L RC +T CNVP W
Sbjct: 694 EGVRKSALSSLWRCATTYYKVCNVPQW 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,774
Number of Sequences: 5004
Number of extensions: 45001
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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