Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J19
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     162   3e-40
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   4e-40
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            136   1e-32
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   7e-14
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)                 29   4.3  
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  162 bits (393), Expect = 3e-40
 Identities = 85/174 (48%), Positives = 112/174 (64%), Gaps = 3/174 (1%)
 Frame = +2

Query: 137 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGA 316
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L +EERNLLSVAY NVVGA
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62

Query: 317 RRSSWRVISSIEQKTEGSERKQQMAKXYRVKVQXELXXICYDVLGLLDKHLIPKAS---N 487
           RRSSWRVISS+EQK    E    + K YR  +  EL   C +VL +L+ +L+       N
Sbjct: 63  RRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDIN 120

Query: 488 PQSKVFYLKMKXDYYRYLAQVATGXTXHSVVXDSQKAYQDAFEISKAKMQPTHP 649
            ++KVFYLKM+ DY+RYL +VA G +    +  S++AY+DA      ++ P+HP
Sbjct: 121 TEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHP 173


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  161 bits (391), Expect = 4e-40
 Identities = 84/146 (57%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
 Frame = +2

Query: 218 MAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSSWRVISSIEQKTEGSERKQQMAKX 397
           MA AM E TE    L  EERNLLSVAY NVVGA+RSSWRVISSIEQK EGSERK+Q  + 
Sbjct: 1   MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60

Query: 398 YRVKVQXELXXICYDVLGLLDKHLIPKASNPQSKVFYLKMKXDYYRYLAQVATGXTXHSV 577
           YR  ++ EL  +C  VL LL+  LIP A + +SKVFYLKMK DYYRY  +VA       V
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120

Query: 578 VXDSQKAYQDAFEISK--AKMQPTHP 649
           V  + KAY +A EI++   K+ PT P
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDP 146


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  146 bits (353), Expect = 2e-35
 Identities = 73/137 (53%), Positives = 98/137 (71%)
 Frame = +2

Query: 149 MSVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSS 328
           M V +E L+  AKL+EQ +RYD+MA  M EV+E   +L  EERNLLSV+Y N+VG RRSS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSS 139

Query: 329 WRVISSIEQKTEGSERKQQMAKXYRVKVQXELXXICYDVLGLLDKHLIPKASNPQSKVFY 508
           WRVISSIE+KT  S     + K Y+  ++ EL  +C +VLG+L++ LIP A + ++KVFY
Sbjct: 140 WRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFY 197

Query: 509 LKMKXDYYRYLAQVATG 559
            K+K DYYRYLA+ + G
Sbjct: 198 FKLKGDYYRYLAEFSHG 214


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  136 bits (329), Expect = 1e-32
 Identities = 70/123 (56%), Positives = 88/123 (71%), Gaps = 3/123 (2%)
 Frame = +2

Query: 158 DKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSSWRV 337
           DKEE V  AKLAEQAERYDDM  +M EV + G EL  E+RNLLSVAY NV+GARR+SWR+
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRI 62

Query: 338 ISSIEQKTE--GSE-RKQQMAKXYRVKVQXELXXICYDVLGLLDKHLIPKASNPQSKVFY 508
           I+SIEQK E  G +  K +M + YR  ++ EL  IC ++L LLD  LI  + + +SKVFY
Sbjct: 63  ITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFY 122

Query: 509 LKM 517
            K+
Sbjct: 123 NKI 125


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
 Frame = +2

Query: 149 MSVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEERNLLSVAYXNVVGARRSS 328
           M   + ELVQ AKLAEQ ER++D+   M +  E    L  E RNLLSV Y NVVG++R +
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFA 245

Query: 329 WRVISSIEQKTEGSERKQQMAK--XYRVKVQXELXXICYDVL 448
           WR +     ++    R  Q+     Y+ K++ EL  +C ++L
Sbjct: 246 WRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 125 ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMXEVTETGVELXNEER 277
           +SPLPS+      +E+V   KLAE+ E  ++++      T+   E   EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693


>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 443 VLGLLDKHLIPKASNPQSKVFYLKMKXDYYRYLAQVATGXTXHSVVXDSQKAYQDAFEIS 622
           +LGL++ H+ PK+ +   ++F      +Y+ +L  V    T    +  +   Y    + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173

Query: 623 KA 628
           KA
Sbjct: 174 KA 175


>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 437 YDVLGLLDKHLIPKASNPQSKVFYLKMKXDYY 532
           YD   ++  HL+P A     +++ +K+  DYY
Sbjct: 6   YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYY 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,420,164
Number of Sequences: 59808
Number of extensions: 366630
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)