Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    32   0.063
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   2.4  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   5.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.5  

>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 241 LFVFKIRFVRHHCLYNILILYLLFRVNLLWRESVFFVLCRN-FVTKTLXNRRRFEXY 408
           +F+  +   ++ C Y ++IL LL     LW +S FF   RN F TK      +   Y
Sbjct: 24  IFMLSMIARKYPCPYCMIILGLLINTRTLWSDSTFFSFNRNIFDTKAFPTELKEAGY 80


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 250 IQINKLSNEFPEILGETLLFAIDIF--HLFLKRQLVFVILFPNYF 122
           ++  KLSN+FP   G+ +   +D F   L L    VF++L   YF
Sbjct: 3   VKFLKLSNDFPFCSGQAMSGVLDTFILTLCLGFTRVFLVLISLYF 47


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 528 TMKRSRHRWLGFTIFVCLLXILASELPNMRIEGTPDFSNTT 650
           T+  S   WL       LL  L S + + RIEGT   + T+
Sbjct: 153 TLSNSNDSWLWQRFSSLLLNCLVSSINSHRIEGTDTSAETS 193


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 366 CYEDIXEQKAF*XIFWTNLTTETLATSPRFASETLK 473
           C+ D+        ++W +    T+  +P  A+ETLK
Sbjct: 450 CWSDMFHDFQNQALYWISRYISTMKYNPELAAETLK 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,055
Number of Sequences: 5004
Number of extensions: 44465
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)