Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    30   1.2  
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF125442-12|AAD12797.1|  260|Caenorhabditis elegans Hypothetical...    28   6.7  
U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 199 LLFAIDIFHLFLKRQLVFVILFPNYFPGFPSVHSRVRSL*GFSFIYIFFYVTEPRPI 29
           ++F ID   +FL   +V    F  YFP F  V     S     FIY  +Y T+  PI
Sbjct: 398 VVFEIDFLPIFLVANIVIFHSFYLYFPRFFQVSHNFSSF-SVLFIYCIYYPTKKCPI 453


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 184 DIFHLFLKRQLVFVILFPNYFP--GFPSVHSRVRSL*GFSFIYIFFYVTEPRPIVVK 20
           + F   L++ L  +     Y+P  GF  VHS+VR+L  +   Y      +P  ++VK
Sbjct: 260 EYFGELLQQTLSGLDYLKQYYPNVGFEEVHSKVRNLTHYFLYYSIIVSRQPPSVIVK 316


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 184 DIFHLFLKRQLVFVILFPNYFP--GFPSVHSRVRSL*GFSFIYIFFYVTEPRPIVVK 20
           + F   L++ L  +     Y+P  GF  VHS+VR+L  +   Y      +P  ++VK
Sbjct: 260 EYFGELLQQTLSGLDYLKQYYPNVGFEEVHSKVRNLTHYFLYYSIIVSRQPPSVIVK 316


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 184 DIFHLFLKRQLVFVILFPNYFP--GFPSVHSRVRSL*GFSFIYIFFYVTEPRPIVVK 20
           + F   L++ L  +     Y+P  GF  VHS+VR+L  +   Y      +P  ++VK
Sbjct: 306 EYFGELLQQTLSGLDYLKQYYPNVGFEEVHSKVRNLTHYFLYYSIIVSRQPPSVIVK 362


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -1

Query: 221 PGDFGRDPSLCYRYFSFISQTPIGFCYTFS-ELFSWFSVGALAREVSLRFFVYIYIFLCN 45
           P +FG   SL    FSF    P G  Y F+ +   W        EV+   F  I +F+  
Sbjct: 137 PTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLGWIGEVTPCTEVAQEIFFIIMLFITG 196

Query: 44  RAT 36
             T
Sbjct: 197 ATT 199


>AF125442-12|AAD12797.1|  260|Caenorhabditis elegans Hypothetical
           protein H04M03.12 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 552 WLGFTIFVCLLXILASELPNMR 617
           WL F +F+CL+ +L S  P+ R
Sbjct: 201 WLAFVLFLCLVVVLGSLSPDDR 222


>U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical
           protein C28G1.2 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +2

Query: 14  ESLHDDRPWLCYIKKYIYKRKT--SKRPHARVHXXXXXXXXXXXYNKNQLAFEK*MKNID 187
           E LH+ R WL Y  KY  K  T   K  H  ++           Y    L F   +  + 
Sbjct: 104 EKLHEKRSWLFYPSKYNSKVITYLIKEKHVLLNVDDAFQMISIMYENKSLQF---VVLVP 160

Query: 188 SKEKGLAQNLREFIRE 235
           SK  GL + L++  ++
Sbjct: 161 SKPCGLKKALKKLTKQ 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,854
Number of Sequences: 27780
Number of extensions: 243238
Number of successful extensions: 595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)