Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J16
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 202 8e-53
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 202 8e-53
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 202 8e-53
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 199 7e-52
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 193 6e-50
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 119 9e-28
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 119 1e-27
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.7
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 2.2
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 6.8
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 202 bits (494), Expect = 8e-53
Identities = 96/124 (77%), Positives = 109/124 (87%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 250
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 251 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKH 427
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHE AR K+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 428 LGRK 439
+G K
Sbjct: 121 VGGK 124
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 202 bits (494), Expect = 8e-53
Identities = 96/124 (77%), Positives = 109/124 (87%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 250
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 251 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKH 427
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHE AR K+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 428 LGRK 439
+G K
Sbjct: 121 VGGK 124
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 202 bits (494), Expect = 8e-53
Identities = 96/124 (77%), Positives = 109/124 (87%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 250
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 251 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKH 427
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHE AR K+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 428 LGRK 439
+G K
Sbjct: 121 VGGK 124
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 199 bits (486), Expect = 7e-52
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 250
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 251 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKH 427
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHE AR K+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 428 LGRK 439
+G K
Sbjct: 121 VGGK 124
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 193 bits (470), Expect = 6e-50
Identities = 91/124 (73%), Positives = 105/124 (84%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 250
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 251 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKH 427
IVV L GRLN CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHE AR K+
Sbjct: 67 IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126
Query: 428 LGRK 439
+G K
Sbjct: 127 VGGK 130
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 119 bits (287), Expect = 9e-28
Identities = 56/117 (47%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Frame = +2
Query: 86 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 265
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 266 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKHLG 433
GR+N C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHE A +++G
Sbjct: 65 QGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVG 121
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 119 bits (286), Expect = 1e-27
Identities = 55/117 (47%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Frame = +2
Query: 86 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 265
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 266 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARXKHLG 433
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHE A +++G
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVG 121
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 149 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 256
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 170 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 334
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 161 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 328
S +I L ++ K IG F+I DH G + V+ LTG L + + S + + D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254
Query: 329 ER 334
E+
Sbjct: 255 EK 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,416,329
Number of Sequences: 28952
Number of extensions: 172852
Number of successful extensions: 339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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