Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J15
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 86 4e-18
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 39 7e-04
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.3
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.0
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 25 7.0
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 9.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.2
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 86.2 bits (204), Expect = 4e-18
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Frame = +1
Query: 232 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEXKD 408
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 409 MHGETPYEIMFGPDICGPXTXKVHVIFSYK-------GKNHLIKKDIRCKDDVYTHLYTL 567
M Y IMFGPD CG +VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCG-VNDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 568 IVKPDNTYEVLID 606
IVKPD T+EV I+
Sbjct: 207 IVKPDQTFEVRIN 219
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 38.7 bits (86), Expect = 7e-04
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)
Frame = +1
Query: 112 FEEKFPDD---SWESNWVYSEHPXKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYAL-S 279
F E+F + +W S W + K+ G + L S D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRWRAPVN--KDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 280 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGETPYEIMFGPDI 453
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 454 CGPXTXKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVK 576
CG I SY GK HL + T +YTL+++
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ 191
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 118 EKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPXDDKGLKTSEDA 261
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 115 EEKFPDDSWESNWVYS 162
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 197 NLNFPNSFXGCSLYTQLLSHESSGNFSSKNTSQFIEDNAS 78
N N F + + S +SGNFS T Q DN S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTS 614
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 160 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 68
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 373 LKVFDCKLEXKDMHGETPYEIMFGPDICGPXTXKVHVIFSYKGKNHLIKKDIRCKDDVYT 552
+K+F + K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQPILDC---------KEHQRQDELRLFEDVET 204
Query: 553 HLYTLIVKP 579
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -2
Query: 483 YVYLXGSWTTDVRAEHNLIWS---LSVHVLXLQFAVKDLEVSASTVNVLFMFDSELDDQG 313
Y+ L GS D R++ +++ V++ L L ++ T + + +FDS+ +
Sbjct: 779 YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838
Query: 312 FTLITERFELTGESIEPRIFR 250
+R G++ E RI+R
Sbjct: 839 DLQAQDRAHRIGQTKEVRIYR 859
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 MLSPVSSNRSVMRVNPWSSSSLSNMNKTL-TVEADTSRSLTAN 394
+L+ VS + + N W S ++SN N + ++ D S S+ A+
Sbjct: 4 LLNSVSFSNASNPHNAWGSENISNSNSAIPSITNDVSFSMEAS 46
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 514 IKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDMRSDLRLKRLD 639
+++ I DD+ L I+ N YE L + + LR + LD
Sbjct: 456 LQEQIHQNDDLIESLKNQILTWKNKYEALAKLYTQLRQEHLD 497
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 244 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCG 363
KT Y +SRK P L + F K DCG
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDCG 991
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,972
Number of Sequences: 5004
Number of extensions: 53682
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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