Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J15
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   2e-30
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                64   1e-10
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      31   0.60 
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_13045| Best HMM Match : Ras (HMM E-Value=0)                         29   4.2  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)                 28   7.4  
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     27   9.7  
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                27   9.7  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   9.7  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  129 bits (311), Expect = 2e-30
 Identities = 59/92 (64%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +1

Query: 106  VFFEEKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYALSRK 285
            V F EKF D SWE  WV S     + GKFK TAGKF+ D   DKG++TSEDA+FY +S K
Sbjct: 756  VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815

Query: 286  F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 378
            F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816  FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +1

Query: 487 FSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID 606
           FS K + ++       KDD  THLYTLIV+PDNTYEV ID
Sbjct: 831 FSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKID 870


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
 Frame = +1

Query: 388 CKLEXKDMHGETPYEIMFGPDICGPXTXKVHVIFSYKG-KNHLIKKDIRCK--------- 537
           C L  +    +TPY IMFGPD CG    K+H IF +K  KN  I++    K         
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGEDR-KLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86

Query: 538 DDVYTHLYTLIVKPDNTYEVLIDMRS 615
           D   THL+TL+V+PDNT+EV ID  S
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQES 112


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 365 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSXGSLKNFPAVN 195
           P +  SC CL V W T GLP L++G   L    R   L+   +  P     SL +   V 
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485

Query: 194 LNFPNSFXGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 81
              P++  G +    +    S+G+  S+ +SQ   D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523


>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 625 VADHFSCQ*GLHRCCRVSQSECTNVC 548
           V DH+      HRCC  S S  TNVC
Sbjct: 127 VVDHYLSDVSSHRCCETSPSWKTNVC 152


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 326  WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSXGSLKNF 207
            +TT+GLPS ++ +NL E   NL S    KP      + ++
Sbjct: 959  YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998


>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
          Length = 629

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 142 PTNHQET-SPQRIHHNLSKIMPAS*QRPVQQLSFSDSQYH 26
           PT    T SPQ +  +L + MPA    PV Q + S +Q H
Sbjct: 352 PTQFTPTQSPQLLQQHLQRHMPAQVSYPVTQGTVSSTQLH 391


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 168 VLTVHPIAFPRIIRKLLLKEYI 103
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 18  ERRWYCESENESCCTGRC 71
           + RW+C S     C GRC
Sbjct: 51  DARWFCRSSESLSCAGRC 68


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 547 YTHLYTLIVKPDNTYEVLIDMRSDLRLK 630
           Y ++  L++K DNT + L+D  + L+ K
Sbjct: 169 YVNINNLVIKYDNTLKALLDKHAPLKAK 196


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 366 ASTVNVLFMFDSELDDQGFTLITERFELTGES 271
           A    VLF F   LD+Q F ++ ER  L+G+S
Sbjct: 36  AELQKVLFDFHYFLDEQQFNILLERCGLSGKS 67


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 220  DPXDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTV 336
            D  D    KTSE     AL  K K    E + +VVQFT+
Sbjct: 912  DSADILSRKTSEAVLESALESKTKELLVESRQMVVQFTI 950


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,172,954
Number of Sequences: 59808
Number of extensions: 439930
Number of successful extensions: 1096
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)