Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J14
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 30 1.4
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 30 1.4
09_04_0690 - 19488879-19488999,19489143-19489390,19489969-194901... 29 4.2
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024... 28 5.6
03_02_0250 + 6812122-6812235,6812623-6812736 28 7.4
03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237 28 7.4
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 27 9.8
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807... 27 9.8
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 27 9.8
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 89 RVRLFIISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLYRKFKRGEEK 256
R ++F T+ LTP RK + + N ++ N + + + K+YRK GEEK
Sbjct: 670 RFQIFFDDRNTSLLTPDTRKAAYLSVMHNVSSTNRSGYDALL--KVYRKSAEGEEK 723
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/19 (57%), Positives = 18/19 (94%)
Frame = +3
Query: 246 AKRKRGKNVEKTPSQSGGD 302
+KRK+GK+++KTP++SG D
Sbjct: 714 SKRKKGKSLKKTPAKSGHD 732
>09_04_0690 -
19488879-19488999,19489143-19489390,19489969-19490196,
19495784-19495897
Length = 236
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 104 IISNFTTKLTPKHRKVIFSNNKINENNQNGATNE 205
I+S +LTPK S N+ ++N Q+G TN+
Sbjct: 102 IVSANIYQLTPKQLSTATSGNRRHKNEQHGLTND 135
>06_03_1458 +
30301585-30301775,30302131-30302245,30302345-30302430,
30302552-30302662,30303154-30303208,30303327-30303437,
30304347-30304403,30304847-30305016,30305103-30305210,
30305643-30305716,30305757-30305779,30306188-30306283,
30306502-30306582,30306934-30307068,30307162-30307227,
30307283-30307297
Length = 497
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 152 IFSNNKINENNQNGATNEIFILRKLYRK 235
+ ++++NEN Q E+FI+RK+ K
Sbjct: 313 VLKSDRLNENMQEEFNEEVFIMRKIRHK 340
>03_02_0250 + 6812122-6812235,6812623-6812736
Length = 75
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 164 NKINENNQNGATNEIF-ILRKLYRKFKRGE-EKKRQKCRKNTFTI 292
N+ N+NN+N A N++ I R+ + GE +++ +K KN T+
Sbjct: 6 NEENQNNENVANNDVDPIERETAKASSSGEHDREERKTEKNQLTL 50
>03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237
Length = 620
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 38 HSHYQLDRNTGTTYTCWRVRLFIISN 115
HS+Y+L+ G Y W+ R ++S+
Sbjct: 592 HSYYKLEERDGALYLGWKNRKLVVSS 617
>06_03_0032 - 15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 637 VSPIKYNPKS-LQCCGTEQ*YKAEEHAFSLQLTDM 536
+ PIKY P+S ++CC T + E++ L +T++
Sbjct: 953 IRPIKYRPRSIIRCCSTTRGKAREDYYQVLGVTEI 987
>04_01_0616 -
8069107-8069217,8070127-8070499,8070514-8070751,
8070881-8071189,8071225-8071363
Length = 389
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 134 PKHRK-VIFSNNKINENNQNG 193
PK RK V+F NN N NN NG
Sbjct: 209 PKTRKDVMFMNNNNNNNNNNG 229
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 119 TTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLYRKFKRGEEKKRQKCRKN 280
T TP H + + + Q N + + +K +K K+ ++KK++K +KN
Sbjct: 38 TEPKTPYHSMI--DEDDVENYQQENIWNPVVMKKKKKKKKKKKKKKKKKKKKKN 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,208
Number of Sequences: 37544
Number of extensions: 298192
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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