Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J14
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)                 31   0.62 
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 29   2.5  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              28   5.7  
SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               28   5.7  

>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
          Length = 338

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 185 QNGATNEIFILRKLYRKFKRGEEKKRQ 265
           +NG T+ IF+L+ L  K+ +G+ KKR+
Sbjct: 15  KNGTTDNIFVLKTLIDKYVKGKPKKRK 41


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 104 IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLYR 232
           I   ++   TP+   +I +N     N +NGA N++  LR+L++
Sbjct: 476 IFPRYSMTKTPRGICLIINNMNYIGNRRNGANNDVNALRRLFK 518


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 168 KSTKTIKTERQTRFSFCENFIANLNEAKRKRG-KNVEKTPSQSGGDTVSTG 317
           K+ K + TE  TR       +  LN+ K      ++EK  S S G TV+TG
Sbjct: 155 KTEKLLLTETVTRAEARRRALRKLNDRKVSNSVPSIEKRDSTSSGATVATG 205


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 168 KSTKTIKTERQTRFSFCENFIANLNEAKRKRG-KNVEKTPSQSGGDTVSTG 317
           K+ K + TE  TR       +  LN+ K      ++EK  S S G TV+TG
Sbjct: 269 KTEKLLLTETVTRAEARRRALRKLNDRKVSNSVPSIEKRDSTSSGATVATG 319


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 185 QNGATNEIFILRKLYRKFKRGEEKKRQ 265
           +NG T+ IF+L+ L  K+ + + KKR+
Sbjct: 801 KNGTTDNIFVLKTLIDKYVKSKPKKRK 827


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 389 SFXTPFFLESYSAIMGRSWGFLKTAGAN--GIAA*L*RCFFDIFASFSLRLV 240
           S  T  FL+ YS    R  G   T      G+ + + RC  D+++SF+ RL+
Sbjct: 519 SAFTRCFLDGYSMFTRRLHGVYSTFTRRLLGVYSTVTRCLLDVYSSFTRRLL 570


>SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 250 REKEAKMSKKHLHNQAAIPLAPAVFK 327
           +E   K SK+HLH + A   +P VFK
Sbjct: 733 KEIPVKASKRHLHREEAFSESPNVFK 758


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 534 NISVNCNEKACSSAL-YHCSVPQHC 605
           ++S NC++K  S+    HC  P+HC
Sbjct: 49  HMSKNCDQKCISAGCTLHCDTPKHC 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,284,422
Number of Sequences: 59808
Number of extensions: 379680
Number of successful extensions: 1179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)