Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J14
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 104 IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLY 229
           IIS+ + K    H    ++NN  N N  N   N     +KLY
Sbjct: 314 IISSLSNKTI--HNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 104 IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLY 229
           IIS+ + K    +    ++ N  N NN N   N     +KLY
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 158 SNNKINENNQNGATN 202
           +NN  N NN NGA +
Sbjct: 242 NNNNNNNNNNNGAND 256


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 313 VLTVSPPDCEGVFSTFLPLFLFA-SFKFAIK 224
           +L+ S   C G++  F+PLFL   S+ F I+
Sbjct: 211 LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQ 241


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 313 VLTVSPPDCEGVFSTFLPLFLFA-SFKFAIK 224
           +L+ S   C G++  F+PLFL   S+ F I+
Sbjct: 87  LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQ 117


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 146 KVIFSNNKINENNQN 190
           K I +NN  N NN N
Sbjct: 88  KTIHNNNNYNNNNYN 102


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 146 KVIFSNNKINENNQN 190
           K I +NN  N NN N
Sbjct: 88  KTIHNNNNYNNNNYN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,304
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)