Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J13
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.5  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   2.5  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   4.3  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   4.3  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   4.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   5.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   7.5  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.5  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 109 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 228
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 103 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 192
           ++   DFFK +    ++ H TL ++ NSL+
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 73  CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 249
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72

Query: 250 LQQL 261
             Q+
Sbjct: 73  NNQI 76


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 145 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQXSA 294
           +K+   + E+Q   +T      DFS   K   +     L+AF K L+ S+
Sbjct: 89  SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASS 138


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 293 LGDANGKAXEALEQSXQNIERTAEELRKAHPD---VEKNATALREKLQAAVQ 439
           + +A  KA ++LEQ+    +   E L K H +    E+   + +EKL A ++
Sbjct: 52  INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLK 103


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 368 LRKAHPDVEKNATALREKLQAAVQNTVQE 454
           L  AH D+E   T++RE+L++ +    +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 82  LAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDA 207
           L +   V R    F + +EH+     K+LE+Q + L +SKDA
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQSKDA 233


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 420 FSRRAVAFFSTSGWALRSSSAVRSMF 343
           FSR  V FFS    AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +2

Query: 311 KAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKL 466
           KA + LE+  ++ E + EE+   H    +  T+ +   +   +  +QE  ++
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRV 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,166
Number of Sequences: 5004
Number of extensions: 21816
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)