Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J13
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    35   0.051
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     34   0.088
04_01_0180 + 2034021-2034023,2034741-2035088                           31   0.47 
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    28   4.4  
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491...    28   5.8  
03_06_0040 + 31240164-31241102,31241280-31241897                       27   7.7  

>02_01_0075 -
           522554-522616,522742-522748,523033-523136,523237-523368,
           525209-525401,525978-526330,526693-526791,526864-526935,
           527062-527213,527338-527386,527755-527885,528067-528307,
           528392-528565,528656-528797,529236-529282,529370-529450,
           530170-530271,530345-530440,531437-531444,531575-531616,
           531830-531894,534761-534853,534888-534959,535303-535509,
           536318-537226,537503-538158
          Length = 1429

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 287 AALGDANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKL 466
           AA+ DA G+  +A+E     ++   E+L  A+PDVE     L E L+ A ++  ++   L
Sbjct: 514 AAIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSL 573

Query: 467 ANXVXSN 487
            N   +N
Sbjct: 574 ENLFVTN 580


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +2

Query: 299 DANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXV 478
           DA G+  EA+E     +    E+L  A+PDV+     L E L+ A +   ++   L N +
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLL 696

Query: 479 XSNVXXTNEKLA 514
            +N     +++A
Sbjct: 697 ETNPYTVTKRVA 708


>04_01_0180 + 2034021-2034023,2034741-2035088
          Length = 116

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 320 EALEQSXQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 442
           EALE+  QN+ R  EE +K H +++K    L  K   L AA +N
Sbjct: 52  EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +2

Query: 320 EALEQSXQNIERTAEELRKAHPDV-EKNATALRE--KLQAAVQNTVQEXHKLANXVXSNV 490
           + +  + QN+E    EL K H D+ E+  + L E  KLQ  ++   +E + L +   S +
Sbjct: 558 DRISDTLQNLEAHYAELEKRHSDLQEEKGSVLDEVIKLQEQIRFERKEHNDLEHSRKSQL 617

Query: 491 XXTNEKL 511
              +EK+
Sbjct: 618 DALHEKI 624


>12_02_1167 +
           26647293-26648356,26648493-26648577,26649129-26649191,
           26649381-26649443,26649987-26650070,26650229-26650783
          Length = 637

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 311 KAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKL 466
           KA   LE+   ++E   E    A+ ++++    L+EK  + V+N  +  H+L
Sbjct: 391 KANGNLEKQLLSLEEKYENATHANGELKEELLFLKEKFVSVVENNTRLEHQL 442


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 79  ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA--WKD 234
           A+AQ    RR+APD   D+    +E    L+ + N L  + +  D+  A  W D
Sbjct: 190 AIAQSKTTRREAPDADTDMSMEAQELRHVLD-ELNPLIGAANLWDYLPALRWFD 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,329,982
Number of Sequences: 37544
Number of extensions: 171525
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)