Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J13
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_43708| Best HMM Match : TPR_2 (HMM E-Value=0.011) 30 1.1
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 30 1.5
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8) 28 4.5
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 28 5.9
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 127 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 264
+ IEH + K +QQF+S K+ D D S K+ + ++ L+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513
>SB_43708| Best HMM Match : TPR_2 (HMM E-Value=0.011)
Length = 270
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +2
Query: 299 DANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNT---VQEXHKLA 469
+A G EAL + + T E LR H + ALR+ + A++NT +++ H+
Sbjct: 8 EALGDTHEALRDTHDALRDTHEALRDTHEALRDTHEALRD-IHEALRNTHEPLRDTHEAL 66
Query: 470 NXVXSNVXXTNEKLAPXIKAAYD 538
+ T+E L +A D
Sbjct: 67 RYTHEALRDTHEALRDTHEALRD 89
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 341 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLAN 472
++I+ EL K + D+E+ T LRE L++ V++ + +LAN
Sbjct: 1407 ESIQAEKSELGKRNWDLEEIVTNLREDLESLVKHRAELEEQLAN 1450
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 305 NGKAXEAL---EQSXQNIERTAEELRKAHPDVEK 397
NGKA E + E+ IE E++RKA+ ++EK
Sbjct: 1930 NGKATEMVKKNEEKNNEIEEMREKMRKANEEIEK 1963
>SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8)
Length = 251
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 350 ERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 454
+RT EE+R+ D+++ +RE + + +N Q+
Sbjct: 172 KRTVEEIRRLDSDIQQRVVKIREDIATSGENIQQQ 206
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +2
Query: 329 EQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXVXSNVXXTNEK 508
+++ +E + +R+ H + + L K+QA +T E LA V +
Sbjct: 1395 DETISQLENDLKSVRQLHNETVEEKGKLEAKIQAYKISTQSEHEVLAEEVYTRYSSRTRA 1454
Query: 509 LAPXIKAAYDD 541
I+ Y+D
Sbjct: 1455 SIERIRQQYED 1465
>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 293 LGDANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQA 430
LG ++G E +E+ + I T +RK+ PD + L E L+A
Sbjct: 568 LGASDG---ENVEEDSKEIHLTCHSMRKSPPDTHTTSVELIESLEA 610
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +2
Query: 299 DANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXV 478
D K + +E+ Q+ +E VE+N +EK AVQN + E ++A
Sbjct: 552 DKQEKENKQVEEEQQDEPVKQDEQENRDEPVEQNEQEKQEKALDAVQNIINEELRMAAAE 611
Query: 479 XSNVXXTNEK 508
N+K
Sbjct: 612 ERKKEIENKK 621
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 305 NGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 454
N + EAL+ + + +E+ + +K+ TAL+E+L + VQ +E
Sbjct: 642 NNELNEALQAAETKNKAMEKEIDALKQNKDKDVTALKEELTSEVQKYKEE 691
>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 166 LEQQFNSLTKSKDAQDFSKAWKDGSESVLQQL-NAFAKSLQXSA 294
L Q LTK +D+S+AW G E +LQ++ + A SL A
Sbjct: 304 LAQASTKLTKRLTTKDWSRAWSSG-ELILQKMTQSSANSLISEA 346
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,595,729
Number of Sequences: 59808
Number of extensions: 193135
Number of successful extensions: 847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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