Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J13
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C... 30 0.91
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C... 30 0.91
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 30 0.91
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 28 3.7
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 28 3.7
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 3.7
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 3.7
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 4.9
At3g58840.1 68416.m06558 expressed protein 28 4.9
At5g51370.1 68418.m06369 F-box family protein similar to unknown... 27 8.5
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 8.5
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 8.5
At3g50180.1 68416.m05486 hypothetical protein 27 8.5
>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 311 KAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXVXSNV 490
KA + + +IE EELR HPD + N L+ K+ V+ +Q + +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSIGDAYLKRA 245
Query: 491 XXTNEKLAPXIK 526
E L P +
Sbjct: 246 EFNQEPLLPKFR 257
>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 311 KAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXVXSNV 490
KA + + +IE EELR HPD + N L+ K+ V+ +Q + +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSIGDAYLKRA 245
Query: 491 XXTNEKLAPXIK 526
E L P +
Sbjct: 246 EFNQEPLLPKFR 257
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/72 (22%), Positives = 30/72 (41%)
Frame = +2
Query: 299 DANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXV 478
+A GKA E + + +N+E+ E R+ ++ L+E+ A Q Q+ +
Sbjct: 284 EAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQEASQKTRESTESG 343
Query: 479 XSNVXXTNEKLA 514
T + A
Sbjct: 344 AQKAEETKDSAA 355
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 320 EALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ 451
EAL+ S Q + AE LRKA + E + L +L+ A + Q
Sbjct: 997 EALKASLQAERQAAENLRKAFSEAEARNSELATELENATRKADQ 1040
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +2
Query: 335 SXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLANXVXSN 487
S N+ RT ++ HP+ + + +RE + + ++E +L V N
Sbjct: 9 SSNNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRLPQGVDIN 59
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 287 AALGDANGKAXEALEQSXQNIERTAEELRKAHPDVEKNATALREK 421
AAL + + +AL + ER AEE R AH + K A RE+
Sbjct: 370 AALNEGKLSSLQALREELATTERRAEEERSAH-NATKMAAMERER 413
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 118 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 234
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 341 QNIERTAEELRKAHPDVEKNATALREKLQAA---VQNTVQE 454
+++E+ +E RKAH + A AL +LQAA V N QE
Sbjct: 876 KSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQE 916
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 311 KAXEALEQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHK 463
KA + + + E+ AE LRK +VEK L K+ ++E K
Sbjct: 128 KALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDLERKIGVLEVREMEEKSK 178
>At5g51370.1 68418.m06369 F-box family protein similar to unknown
protein (emb|CAB82288.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 355
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 260 SCCSTDSEPSFQALLKSCASFDLVSELNCC 171
SC D+ P + LL+SC + + + CC
Sbjct: 286 SCRKIDASPGPEKLLRSCPAMESLQLKRCC 315
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 320 EALEQSXQNIERTAEELRKAHPDVEKNATALREKL--QAAVQNTVQEXHKLANXVXSNVX 493
++L+ E E ++ ++ T +++ L Q A NT++E HK N +
Sbjct: 994 DSLQVQKSETEAELEREKQEKSELSNQITDVQKALVEQEAAYNTLEEEHKQINELFKETE 1053
Query: 494 XTNEKLAPXIKAA 532
T K+ K A
Sbjct: 1054 ATLNKVTVDYKEA 1066
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.1 bits (57), Expect = 8.5
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 299 DANGKAXEAL---EQSXQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQEXHKLA 469
D K E+L E QNI + AEELR D K E+L AA ++ V++ KL
Sbjct: 647 DQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLVEKETKLL 702
Query: 470 NXVXSNVXXTNEKLA 514
+ V +LA
Sbjct: 703 STVQEAEELRRRELA 717
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 12 PSALSLSTAHHGRQVRSSLRLHR 80
P +SL HHGRQ S+ H+
Sbjct: 197 PQTVSLGPYHHGRQQTQSMECHK 219
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,895,225
Number of Sequences: 28952
Number of extensions: 126507
Number of successful extensions: 565
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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