Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J11
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    30   1.8  
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787...    29   3.2  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    28   7.4  

>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 288 PFLRPQHLRRQRGPAPQAAGACRR--LRTSATHQPQVPIR 401
           P  R    RR+R PAP++    RR  ++T+++H+ + P+R
Sbjct: 237 PRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVR 276


>09_02_0363 -
           7871730-7871853,7871986-7872075,7872720-7872799,
           7872881-7872964,7874944-7874992,7875114-7875240,
           7875798-7875934,7876004-7876050,7876126-7876185,
           7876810-7876862,7878205-7878269,7879050-7879174,
           7879307-7879366,7879670-7879806,7880737-7880805,
           7880889-7881045,7881121-7881235,7881855-7881916
          Length = 546

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 177 KTFRRLIPADVLRDFPGMCFASTRCITVEPGNTWELSP-FLRPQHL 311
           K F   IP D+L    G C + +   TVE  +T E++P FL P+ L
Sbjct: 139 KCFWGKIPIDLLASSLGNCVSLSLGHTVEMSSTVEMTPSFLEPKFL 184


>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
            8509204-8509553,8509631-8509729,8509811-8510105,
            8510200-8510405,8510498-8510689,8510766-8511163,
            8511258-8511444,8511473-8511528,8511800-8511872,
            8512012-8512872,8514353-8514778
          Length = 1134

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 264  PGNTWELSPFL-RPQHLRRQRGPAPQAAGAC----RRLRTSATHQP 386
            P   W  +P + RP+   R+RGP+P    AC    R  R S T  P
Sbjct: 1028 PSQDWRYTPDVPRPRTRGRRRGPSPAIQKACWAGPRPKRPSPTSAP 1073


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,344
Number of Sequences: 37544
Number of extensions: 240054
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)