Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J11
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       28   5.7  
SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 319  SEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTNKTAPFPGCCPIFTC 459
            S+DQ P+ L+L          N KC+     T+  AP PG CP   C
Sbjct: 1442 SKDQAPKTLDLPLGGDRNSSKNGKCKC----THDAAPLPGSCPKAFC 1484


>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  QNGTRELPFLFFLKTHFFC*TNPXKM 110
           +N  R LPF F  K H  C  NP +M
Sbjct: 137 ENANRPLPFPFPSKLHVVCVANPAEM 162


>SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = +2

Query: 218 FPRNVLRVHPLHHRRARQHLGXXXXXXXXXXX------XXXRTSPPGCWSLSKTADLCHS 379
           +PR V  ++P+H+R A    G                    +    GCWS S+ A   +S
Sbjct: 86  YPRRVPVMYPMHYRGASHSRGSASPTGYRLEDNELAPDARRKIYEGGCWSESRQARKAYS 145

Query: 380 PTP 388
           P P
Sbjct: 146 PLP 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,955
Number of Sequences: 59808
Number of extensions: 265844
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)