Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J07
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    34   0.020
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    27   2.3  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   5.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.4  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   7.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.5  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.5  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 544 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYF 648
           P+   YGF +YL S     ++ +WA TP   L +F
Sbjct: 5   PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFF 39


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 526 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAF 621
           HT A T    + GF L+L S+T L     WAF
Sbjct: 81  HTKAVTKGLKI-GFMLFLISETFLFASIFWAF 111


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 538 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 645
           PT    LYG  L  L SKTT ++  I A+ P   +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
            Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 223  KIISLIEMNTKSTDKTAITLKLSFTSNDNASLVYDVLNVDXELKGSG 363
            KI  L+E    + D +  T     +  +N  L+Y++  VD    G G
Sbjct: 886  KIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLG 932


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +1

Query: 178 RISKISKHNL*TY-----YIKII-SLIEMNTKSTDKTAITLKLSFTSNDNASLVYDVLNV 339
           R+S +S  NL  Y     Y+  I S+ E    ST  +A+  K  F+  + AS+ Y++ + 
Sbjct: 436 RLSGLSHKNLIRYNESFWYLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSG 495

Query: 340 DXELKGSGVHREFQLKSNVLYIEFKSLXLK 429
              L  SG+     L +  +Y+  KS  LK
Sbjct: 496 LAFLHNSGI-AHHNLTTECIYLT-KSSCLK 523


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 307 NASLVYDVLNVDXELKGSGVHREFQLKSNVLYIEFKSLXLKRL 435
           N  LV DVL+    +K SG  RE        Y++ KSL +  L
Sbjct: 456 NTGLVSDVLSPFGGVKESGFGREGSKYGISEYLDIKSLTISTL 498


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 238 IEMNTKSTDKTAITLKLSFTSNDNASLVYDVLNVDXELKGSGVHREFQLKSNVLY 402
           I+  T+  D  A   ++  T+ND+   +Y++ +   ELK  G H   Q ++   +
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKG-HANAQSQNRAYF 500


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 NLKLYTNIIKRKTYYVSVKSVNITYKH 214
           +LKL+ NI++R  YY      +I  KH
Sbjct: 687 SLKLFINILERYFYYYDQHCESIIAKH 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,665
Number of Sequences: 5004
Number of extensions: 47208
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)