Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J07
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     31   0.80 
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541...    28   7.4  
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842...    28   7.4  
02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883           27   9.8  

>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 244 MNTKSTDKTAITLKLSFTSNDNASLVYDVLNVDXELKGSGVHREFQLKS 390
           +N K  D TA   +L FT     SL Y+V  +  EL+     REF LKS
Sbjct: 82  LNQKLIDATA---RLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127


>12_02_0387 +
           18453328-18453456,18453699-18453836,18454085-18454144,
           18461532-18462591,18463022-18463521
          Length = 628

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
 Frame = +1

Query: 280 LKLSFTSNDNA---SLVYDVLNVDXELK---GSGVHREFQLKSNVLYIEFKS------LX 423
           L ++F S +N     +++DV+++        G     +F+  S+  Y++ K       + 
Sbjct: 507 LLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTGVIV 566

Query: 424 LKRLRVAVNAILKNILLITKTVENFATK*PAMPEHTPAPTP 546
           +K L+  + A   ++ +I + V +  T+    P+HTP PTP
Sbjct: 567 VKGLQ-PLAASKGDLAMINRAVHSVETRPYERPKHTPKPTP 606


>01_01_1069 -
           8420454-8420670,8421272-8421447,8421556-8421738,
           8421885-8421980,8422064-8422192,8422266-8422445,
           8422524-8422634,8422714-8422869,8422983-8423078,
           8423160-8423327,8423402-8423642,8423724-8423851,
           8424042-8424134,8424214-8424309,8424431-8424523,
           8424741-8424850,8424999-8425134,8425215-8425315,
           8426029-8426152,8426237-8426411,8426523-8426681,
           8427423-8427536,8427669-8427848,8428926-8429005
          Length = 1113

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  KTLCIDNTLNREKLYFPTAVKSRVKTI 96
           K L   N L REKL FPT   SR++T+
Sbjct: 148 KKLIEANPLFREKLVFPTLKASRLRTL 174


>02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883
          Length = 563

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 77  RVG*KPSNRNNYYLQK*VHNLKLYTNIIKRKTYY---VSVKSVNITYKH 214
           ++G  P  R   YLQ  VH L++   IIK +T      +V SVN+   H
Sbjct: 329 KIGHAPQLRMLGYLQPGVHQLEIGNTIIKARTIVRPGTTVPSVNMLALH 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,433
Number of Sequences: 37544
Number of extensions: 246821
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)