Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J06
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 29 0.58
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.77
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 28 1.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 2.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 4.1
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.4
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 7.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 7.2
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.2
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.5
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 483 SEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPS 388
++ S +FNE GPPS Q + S + S PS
Sbjct: 189 ADKSQEEFNENGPPSGQPNGHIESDNESKSPS 220
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 516 RPVCGSKMSFES---EDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTP 361
+P SK S + + S S F+ P SQ DF SPS S+ ++ STP
Sbjct: 256 KPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTP 310
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +2
Query: 359 LGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNL 538
LG++ + TE+ G+MD G+P + + +L+ ++ ++ N+ P+TG+ +STN+
Sbjct: 100 LGLN-VLTEL-GVMDKIGNPAGLETVD-----ALRQQQ--NEQNNASAPRTGISTSTNSF 150
Query: 539 QDGNPNCRNPNGPDNM 586
N P P M
Sbjct: 151 YGNNAAATAPAPPPMM 166
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 495 MSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESS 340
M S+S P S+ E +VGSP+L S+ +T R + SS
Sbjct: 254 MKRRQNSSISQAATPRTVSNSETSYVGSPALKQSKPNSLKSNNTSRKTSASS 305
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 395 LMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNPN 571
L D P + C L GPGSL +++ I + G S N++ P R N
Sbjct: 15 LRQPDQQPIQDSICTLPGPGSLLKKKIRKTEFRIDNGLLGNTSPIINVESKIPFHRRAN 73
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = +2
Query: 314 IEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSND 493
+E H PS D+ + + ID + ++ SPS P + LSS SN
Sbjct: 316 VESHVPPSSNDTKQESSL------IDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNS 369
Query: 494 ILDPQTGLRSSTNNLQDGNPN 556
+ G +S + Q PN
Sbjct: 370 MSSTSNGALNSPSYSQAAIPN 390
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 308 VKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGD-PTKSPSCELGGPGSL-KSERLSS 481
V IE S+PS + + LG + +IDG+ + + + EL + +S
Sbjct: 82 VSIENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSNLQMEGNDKELDTDNNEDESTTFKD 141
Query: 482 DSNDILDPQTGLRSS 526
+ +D++ P++ L SS
Sbjct: 142 EEDDLISPKSYLTSS 156
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 477 DSLSDFNEPGP-PSSQEGDFVGSPSLSMRPSISVLMPSTP 361
++L+ F + P PS+ E P ++ PS+S ++P+ P
Sbjct: 199 EALAAFAQKAPVPSAAEESVSTPPQPAVAPSVSAVVPNLP 238
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 9 SLDRKNFIKIWFL*YDETYINVIKHSVLCHQV 104
S D IK+W L +++ +KHS + + +
Sbjct: 546 SADESGIIKVWDLRSSNQHVSFVKHSSIVYSL 577
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 380 TEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLR 520
T + D+ + T C G P + +S L + DI++P+ +R
Sbjct: 354 THFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVR 400
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 311 KIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSN 490
K+EP + E+ ++D+GVD + D L+ PT E+ +K+ LS+ +
Sbjct: 44 KVEPKNAFKVENQSNDIGVDTVDA-FDHLLLDKTLPTIDAETEV-----IKNTSLSNSKS 97
Query: 491 DILDPQTGLRSSTNN 535
+ QT +R N+
Sbjct: 98 FLHSWQTDIRLRKND 112
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 311 KIEPHSQPSGEDSASDLGVDGIKTEID-GLMDSDGDPTKSPSC 436
KI S + S+L +DG K E + G+MDS+ T S +C
Sbjct: 53 KIMEDSPVTNAGVGSNLNIDG-KVECEAGVMDSESGLTASVAC 94
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = -1
Query: 492 SFESEDSLSDFNEPGPPSSQE------GDFVGSPSL---SMRPSISVLMPSTPRSDAESS 340
S +S + EP PPSSQ+ G SPS ++RPS++ + + DA +S
Sbjct: 21 SLKSTPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVAS 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,908
Number of Sequences: 5004
Number of extensions: 49573
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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