Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J06
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0715 + 13230576-13230848 31 1.1
01_05_0091 + 18048595-18050559 30 1.8
06_01_0290 + 2122758-2123015,2123128-2123544 29 2.4
08_02_1124 + 24485181-24485645 29 3.2
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 29 4.2
03_06_0029 - 31146302-31146630,31146766-31146934 29 4.2
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 28 5.6
04_04_0157 + 23165638-23166633 28 5.6
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 28 5.6
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 28 7.4
07_01_0297 - 2156960-2157736 27 9.8
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 27 9.8
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 9.8
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 27 9.8
01_06_0945 + 33217310-33217427,33218820-33219433 27 9.8
>02_02_0715 + 13230576-13230848
Length = 90
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 335 SGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGP 451
+G ++ + L +DG+++E DG+ D +P+ LGGP
Sbjct: 37 AGVEAVAKLSLDGVESEKDGVGDELETRRMAPAMVLGGP 75
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 519 LRPVCGSKMSFESEDSLSDFNEPGPPSSQ-----EGDFVGSPSLSMRPSI 385
L+P K S ++ + + + + G SSQ + DFVG P+ S RPSI
Sbjct: 548 LKPSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSI 597
>06_01_0290 + 2122758-2123015,2123128-2123544
Length = 224
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 392 GLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILD 502
G GD C++GG G+ K RLS D +L+
Sbjct: 39 GSGSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLE 75
>08_02_1124 + 24485181-24485645
Length = 154
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +1
Query: 124 AVIVQVGEGTXRYD*GEGEGWRCPPQGRAQ*PC*AWPRFPSALGVAAHSGG 276
A VG G + EGEGW+ PP G + P W + LGV GG
Sbjct: 34 ATAAVVGGGDKGKEEEEGEGWKRPP-GVFEFP---WQKCRGGLGVPVGGGG 80
>07_01_1146 +
10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 401 DSDGDPTKSPSCELGG-----PGSLKSERLSS-DSND--ILDPQTG 514
D DPTK PS LGG P LKSE SS D ND I P+ G
Sbjct: 205 DKHPDPTKLPSYTLGGGICTFPDFLKSEIKSSIDFNDASISSPREG 250
>03_06_0029 - 31146302-31146630,31146766-31146934
Length = 165
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 526 DK*SSGWKPKLS*SKWPR*HGFVYNG 603
+K S WKP + S WP HG Y G
Sbjct: 28 NKFSINWKPNTNYSDWPAQHGPFYKG 53
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 401 DSDGDPTKSPSCELGG-----PGSLKSERLSS-DSND--ILDPQTG 514
D DPTK PS LGG P LKSE SS D ND I P+ G
Sbjct: 90 DKHPDPTKLPSYTLGGGICTFPDFLKSEIKSSLDFNDASISGPREG 135
>04_04_0157 + 23165638-23166633
Length = 331
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 420 VGSPSLSMRPSISVLMPSTPRSDAESSPEG*LW 322
+ +P+L +RPS S+ +TP + A ++P LW
Sbjct: 16 IPNPNLLLRPSRSLSTSTTPATRAPATPVAVLW 48
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 272 PEWAATPRADGNRGQAQQG 216
PE A PR +G+RGQ +QG
Sbjct: 28 PEGAGKPREEGSRGQRKQG 46
>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 449 PGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNGPDNMGSC 595
PG+ +++R ++++ND +DP + + + + + R GPD GSC
Sbjct: 1210 PGTDQNQRTNAEANDHIDPDKMEVPDSEDEEAVHEDTRAATGPD--GSC 1256
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 347 SASDLGVDGIKTEIDGLMDSDGDPTKSP 430
+ASDLG D + G+MD D + T SP
Sbjct: 3 AASDLGRDVVVVPPAGIMDDDDESTWSP 30
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 425 SPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNP 553
+PS ++ SL E+L + ND+L + ++ STN++Q G P
Sbjct: 144 NPSEQVVKVSSLPLEQLQTQKNDLLGIKDSVQ-STNSIQHGAP 185
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 326 SQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDP 505
+ P+G SD+ + E DG M+SD +SP + GG + S+ + + +P
Sbjct: 1897 ASPAGPTEKSDVDMPEETGEGDGTMESD----QSPVPQSGGADASPSQMADASPSPAREP 1952
Query: 506 QTGLRSSTNNLQDG-NPNCRNPNGPD 580
S N +Q G P +NP P+
Sbjct: 1953 ------SPNPVQAGAPPEQQNPTPPN 1972
>02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 584 CYLGHLDYDSLGFHPEDYLSSF*G 513
C+LGH+ Y+SLG D L S G
Sbjct: 996 CHLGHILYESLGEEYPDVLGSILG 1019
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -1
Query: 492 SFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESSP 337
SF SL P PS G+P RP S L P+ + + +SP
Sbjct: 35 SFSKTASLCRRPSPSSPSGARSSSPGTPPRGRRPPPSNLRPAAAQHRSPASP 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,827
Number of Sequences: 37544
Number of extensions: 384598
Number of successful extensions: 1271
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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