Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J06
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 30 1.4
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_51842| Best HMM Match : YTH (HMM E-Value=1.8) 29 3.3
SB_43772| Best HMM Match : DUF243 (HMM E-Value=3) 29 3.3
SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042) 29 3.3
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 29 3.3
SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11) 29 4.3
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19) 29 4.3
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005) 28 5.7
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42) 28 5.7
SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.6
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 443 GGPGSLKSERLSSDSNDIL-DPQTGL--RSSTNNLQDGNPNCRNPNGPDNM 586
GG G L S L+S + L P TG R ++NN G+P +NP P M
Sbjct: 336 GGQGQLVSMSLNSTAGQPLGSPVTGSNPRGTSNNPMAGSPMGQNPGSPLTM 386
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -1
Query: 564 LRQFGFPS*RLFVELLRPVCGSKMSFESEDSLSDFNEPGPPSSQ-EGDFVGSPSLSMRPS 388
L Q G P +EL R CG+ + ++D L D +P P + + G LS R S
Sbjct: 3697 LMQRGLPPGTGCLELSRKSCGALTAHMADDKLVD-TDPLPSALHIFASYRGLAILSSRLS 3755
Query: 387 ISVLMPSTPRSDAESSP 337
+V+MP S + P
Sbjct: 3756 CAVVMPQPTASIGGAQP 3772
>SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 401 DSDGDPTKS-PSCELGGPGS-LKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNG 574
+SDG+ + S E+GG S SE DS DI D S ++ D P C N
Sbjct: 11 ESDGEEFEGFESQEIGGSSSDSSSEDEGHDSEDIEDEIWSRNSLPISIPDFTPRCGPKNL 70
Query: 575 PDNM 586
P N+
Sbjct: 71 PGNL 74
>SB_51842| Best HMM Match : YTH (HMM E-Value=1.8)
Length = 244
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 431 SCELGGPGSLK-SERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNGPDNM 586
S E+GG S SE +S DI D + SS ++ D P C N P N+
Sbjct: 22 SQEVGGSSSDSYSEDEGHESEDIEDENLVINSSPISIPDFTPRCGPKNLPGNL 74
>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
Length = 472
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 567 GLRQFGFPS*RLFVELLRPVCGSKMSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSM 397
G ++F F L ++ + G ++SFESED L + N S+ E + S SLS+
Sbjct: 198 GTKEFLFEGNPLVLQSVGQGYGKRLSFESEDVLYNENYFWSDSNPEEGYAFSISLSL 254
>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
Length = 593
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 338 GEDSASDL--GVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQT 511
G+D D GVDG D DGD +C+ G S+ + + +D D +
Sbjct: 22 GDDDVDDADDGVDGSDGSNGNGGDDDGDDGDGGNCDDDDSGDDGSDGNAGNGSDGDDDDS 81
Query: 512 GLRSSTNNLQDGNPN 556
G S N +G+ N
Sbjct: 82 GDDGSDGNAGNGSDN 96
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -1
Query: 519 LRPVCGSKMSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSI---SVLMPSTPRSDA 349
++P GS + +++ SL+ + Q SP LS R + S PS RSD+
Sbjct: 548 VQPSAGSHVRYDTSPSLTPMSARRGGPVQTSSPQTSPILSRRQDVRSSSHTAPSRGRSDS 607
Query: 348 ESSPEG 331
+PEG
Sbjct: 608 PPTPEG 613
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 389 DGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNP 568
DG SDGD + +C+ G+ + +S+ S+D D G +N DG+
Sbjct: 169 DGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVSNGANDVSNGANDGDDVSNVA 228
Query: 569 NGPDNMGS 592
N D++ +
Sbjct: 229 NDGDDVSN 236
>SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11)
Length = 387
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 308 VKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGP 451
V +EP SQ S G IDG +D+DG P G P
Sbjct: 271 VNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDP 318
>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
Length = 493
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 341 EDSASDLGVDGIKTEIDGLMDSD---GDPTKSPSCELGGPGSLKSERLSSDSNDILDPQT 511
E+ + L + + ++G+ DSD GD + GP +S R D +D D Q
Sbjct: 237 ENLEAQLSLSKQELNLNGIDDSDLSDGDLDITLETASRGPSEPRSYRSLEDLDDDSDLQN 296
Query: 512 GLRSSTNNLQDG 547
L+S +L DG
Sbjct: 297 KLKSRLTDLADG 308
>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
Length = 1007
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -1
Query: 513 PVCGSKMSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSD 352
P S+ SF+ +D EP + G PSLS+ SVL ST SD
Sbjct: 122 PSTVSQPSFDEDDIYDQVEEPVFQEKEAGYESIGPSLSVSSEKSVLSTSTTPSD 175
>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
Length = 436
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = +2
Query: 299 THRVKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSP-----SCELGGPGSLK 463
+HR P S + S V+ K E + DS+ D K P EL GS +
Sbjct: 215 SHRRWHRPRSPHDKKSSQPQKPVEKKKVESESESDSESDTEKKPGSPAVESELSPVGSSQ 274
Query: 464 SERLSSDSNDILDPQTGLRSSTNNLQDGNP 553
+ + + N + LR NN D P
Sbjct: 275 GQFVCTVCNKTFRRKAYLRKHMNNHTDDRP 304
>SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 431 SCELGGPGS-LKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNGPDNM 586
S E+GG S SE +S DI D SS ++ D P C N P N+
Sbjct: 22 SQEIGGSSSDSSSEDEGHESEDIEDEIWSRNSSPISILDFTPRCGPKNLPGNL 74
>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1125
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 359 LGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSND 493
L V +T + L ++ G TK+P + G + +R++ D ND
Sbjct: 553 LDVKPSQTTHEKLREAGGQETKAPDNDADGEEKAEDDRVADDDND 597
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,769
Number of Sequences: 59808
Number of extensions: 411725
Number of successful extensions: 1193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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