Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J06
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    33   0.23 
Z74032-9|CAA98464.2|   80|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z81097-3|CAB03167.1|  296|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   5.0  
U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical p...    28   6.6  
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    27   8.7  

>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 392  GLMDSDG-DPTKSPSCE--LGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQD 544
            G  D DG +P  SP     LGGPG L  + L +D   + DP T   S +  +Q+
Sbjct: 1120 GWGDWDGPEPDNSPMPFQILGGPGGLNVQALMADVGRVFDPSTASSSLSQTVQE 1173


>Z74032-9|CAA98464.2|   80|Caenorhabditis elegans Hypothetical
           protein F35B12.7 protein.
          Length = 80

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 574 PR*HGFVYNGGRWRAYGSXGFYGAY 648
           PR +G  Y GGR+  YG  G YG Y
Sbjct: 31  PRGYGGGYGGGRYGGYGGRGPYGGY 55


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 320  PHSQPSGEDSASDL--GVDGIKTEIDGLMDSD-GDPTKSPSCELGGPGSLKSERLSSD 484
            P     GEDS S+   G  G K +  G    D G   K P+ E+ GPG+L   +  S+
Sbjct: 1028 PDITTDGEDSTSETSGGEQGPKGKSKGQPPGDKGSEVKKPTSEVDGPGNLSGTKGKSN 1085



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
 Frame = +2

Query: 317 EPHSQPSGEDSASDLGVDGIKTEIDG----LMDSDGDPTKSPSCELGGPGSLKSERLSSD 484
           EP +      SA D   +G KTE DG     ++ DG   +S        G  KSE  S  
Sbjct: 764 EPETATKPGISAPDKTGEGSKTESDGEEKLTVEKDGKEAQSSGSSATSSGK-KSEATSGS 822

Query: 485 SNDILDPQTGLRSS 526
           S+      TG  +S
Sbjct: 823 SSSSAKSGTGSEAS 836


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 459 NEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESSPEG 331
           NE G PSS   + V S + +  PS S    +TP+ +   SP G
Sbjct: 263 NELGSPSSPSSNCVISTATTSIPSTSTSSTTTPKHNRSVSPRG 305


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +2

Query: 320 PHSQPSGEDSASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGPG-SLKSERLSSDSNDI 496
           PHSQP   D+ SD  +          + SDG   + P CE G     L ++ L ++ N  
Sbjct: 286 PHSQPIPLDTCSDQPI--FPNSTHNAIQSDGFSYEQPICEFGDSQLFLSAKSLCTEPNSS 343

Query: 497 L--DPQTGLRSSTNNLQDGNPN 556
           +  D +  L  S +++   N N
Sbjct: 344 IAEDVKPVLTVSDSDITASNRN 365


>Z81097-3|CAB03167.1|  296|Caenorhabditis elegans Hypothetical
           protein K07A1.5 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -1

Query: 522 LLRPVCGSKMSFESE---DSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSD 352
           +L P CG K +  +E    S S  N    P  +EG   G+PS +   + +   P+   + 
Sbjct: 23  ILLPGCGGKKNRPAEGESSSSSKGNGAKTPEGKEGSEAGTPSAAGSAAPTAPAPAEGAAP 82

Query: 351 AESSPEG*LWGSIFTRCVXXGSFFSAAGVGSD 256
           A ++P+  + G+         ++ + AG+G+D
Sbjct: 83  AAAAPKPPMAGT------HDPNYQTLAGIGND 108


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 5/132 (3%)
 Frame = +2

Query: 203  DEPSDPAEPG-HGSRXXXXXXXXXXXXKKEPXXTHRVKIEPHSQPSGEDSASDLGVDG-I 376
            +EPSDP +PG +GS                P   ++      ++PS  +     G +G +
Sbjct: 1216 NEPSDPNKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGPNGPNGPL 1275

Query: 377  KTEIDGLMDSDG--DPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGN 550
                 G    +G  DP K       GP S  ++   +  N+  DP     +  N   D N
Sbjct: 1276 DPNKPGPNGPNGPSDPNKPGPNGPNGP-SDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPN 1334

Query: 551  -PNCRNPNGPDN 583
             P    PNGP +
Sbjct: 1335 KPGPNGPNGPSD 1346


>U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical
           protein F55G1.12 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 377 KTEIDGLMDSDGDPTKSPSC 436
           KT ID L+DS GDP+  P C
Sbjct: 138 KTCIDELVDSRGDPSTWPEC 157


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 383 EIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCR 562
           +I+   +SDGD  K PS  L    S +  +    S  ++  Q+G  SS+++    + N  
Sbjct: 134 DIENEFESDGDDDKQPSVPLTKTKSFQVSKPVQPS--LIRSQSGNLSSSSSTSSSSSNSS 191

Query: 563 NP 568
           +P
Sbjct: 192 DP 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,959
Number of Sequences: 27780
Number of extensions: 297181
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)