Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J06
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.48 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +2

Query: 386 IDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSSTNNLQDGNPNCRN 565
           + GL    G  + +P+    GPG+  +  L S    + +   G  SST++      + R+
Sbjct: 137 LHGLHGLHGLSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRS 196

Query: 566 PNGP 577
              P
Sbjct: 197 AGSP 200


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  RSIERILLKSGFYNTMR 60
           R ++ ILLKSG Y+ +R
Sbjct: 610 RCVKGILLKSGLYHVLR 626


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 476 SSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNGPDNMGSCT 598
           S+ S   + PQ+ L    +     NP   +P+GP++ GS T
Sbjct: 35  SNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFT 75


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 476 SSDSNDILDPQTGLRSSTNNLQDGNPNCRNPNGPDNMGSCT 598
           S+ S   + PQ+ L    +     NP   +P+GP++ GS T
Sbjct: 35  SNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFT 75


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 492 TFWIHRQASEAR 527
           +FWIHR+A+  R
Sbjct: 265 SFWIHREATSDR 276


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 153 RAFANLNDYRLTTDSLALDDTKHCVLSHLCKS 58
           + F NL + +L    + L+D KH    H  K+
Sbjct: 201 KMFCNLENVKLKELRIILEDIKHINTRHNTKN 232


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 320 VLSSHDACXXVLSSAPPEWAATPRADGNRGQAQQGHWARP 201
           V  S D    V  S+PP    TPR +  + +     + RP
Sbjct: 123 VPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRP 162


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 432 PANWVDLAR*NQKGYLQTRTTFWIHRQASE 521
           P NWV +   +   + + R  +++H+ A E
Sbjct: 161 PTNWVGVFGGSAWSWREERQAYYLHQFAPE 190


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -1

Query: 453 PGPPSSQEGDFVGSPSLSMRPSISVLMPSTP 361
           P PP     +  G P L   P     MP+ P
Sbjct: 416 PMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 432 PANWVDLAR*NQKGYLQTRTTFWIHRQASE 521
           P NWV +   +   + + R  +++H+ A E
Sbjct: 161 PTNWVGVFGGSAWSWREERQAYYLHQFAPE 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,197
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)