Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J06
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical ...    33   0.16 
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim...    32   0.38 
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   2.7  
At2g01060.2 68415.m00011 myb family transcription factor contain...    29   3.5  
At2g01060.1 68415.m00012 myb family transcription factor contain...    29   3.5  
At1g50770.1 68414.m05710 hypothetical protein                          28   4.7  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    28   6.2  

>At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical to
           DREB2B GI:3738232 from [Arabidopsis thaliana]; supported
           by cDNA:gi_3738231_dbj_AB007791.1_AB007791
          Length = 330

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 489 FESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRP 391
           F+  + L D NEPGP  SQ+ + V S S  + P
Sbjct: 279 FDINELLGDLNEPGPHQSQDQNHVNSGSYDLHP 311


>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
            similarity to cohesion family protein SYN2 [Arabidopsis
            thaliana] GI:12006360; contains Pfam profiles PF04824:
            Conserved region of Rad21 / Rec8 like protein, PF04825: N
            terminus of Rad21 / Rec8 like protein; supporting cDNA
            gi|18157648|gb|AF400129.1|AF400129
          Length = 1031

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 311  KIEPHSQPSGEDSASDLGVDGIKTEIDGLM-DSDGDPTKSPSCELG 445
            K EPH++ S E+++    +DG  T  DGLM D+D   T   + + G
Sbjct: 874  KYEPHNEMSNEEASMQNALDGEHTSRDGLMGDNDEMDTMENAHDTG 919


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
           (Atm) identical to ataxia-telangiectasia mutated protein
           (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
           profile PF00855: PWWP domain; contains GA donor splice
           site at exon 73
          Length = 3255

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +2

Query: 350 ASDLGVDGIKTEIDGLMDSDGDPTKSPSCELGGPGSLKSERLSSDSNDILDPQTGLRSST 529
           +S + +D     + GL      P K    E GG   ++  ++S  +  ++   +G R+S+
Sbjct: 19  SSVVALDSGVLAMSGLKCDGKFPVKDVLMEEGGD-KVRKIQVSGGNISLVVDFSGARTSS 77

Query: 530 NNLQDGNPNCRNPN 571
           NN  + N +C N N
Sbjct: 78  NNFFESNASCVNEN 91


>At2g01060.2 68415.m00011 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 237

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 507 CGSKMSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESSPE 334
           CG   S   ++SLS + EP  P S  G  +GSP  S         P   R  A  +P+
Sbjct: 135 CGPDKSLSVDESLSSYREPLTPDS--GCNIGSPDESTGEERLSKKPRLVRGAAGYTPD 190


>At2g01060.1 68415.m00012 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 286

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 507 CGSKMSFESEDSLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESSPE 334
           CG   S   ++SLS + EP  P S  G  +GSP  S         P   R  A  +P+
Sbjct: 184 CGPDKSLSVDESLSSYREPLTPDS--GCNIGSPDESTGEERLSKKPRLVRGAAGYTPD 239


>At1g50770.1 68414.m05710 hypothetical protein
          Length = 632

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 401 DSDGDPTKSPSCELGGPGSLKSERLSSDSN 490
           D   D +K P C L   GS+  E+ SSD N
Sbjct: 493 DIINDGSKEPDCLLHEDGSIAGEKTSSDEN 522


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -1

Query: 474 SLSDFNEPGPPSSQEGDFVGSPSLSMRPSISVLMPSTPRSDAESSP 337
           SLS  + P PP S       SPSLS  P  S    + P S + SSP
Sbjct: 62  SLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,765
Number of Sequences: 28952
Number of extensions: 283145
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)