Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J04
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 312  FYSKLVCTKFYFXVFLGLIGGWSSSV-EQYS 223
            FY K+   K      L  IGGW+ S  ++YS
Sbjct: 1882 FYEKVTAYKSKGIKVLVAIGGWNDSAGDKYS 1912



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 312  FYSKLVCTKFYFXVFLGLIGGWSSSV-EQYS 223
            FY K+V  K      L  +GGW+ S   +YS
Sbjct: 2380 FYKKVVSYKSRGVKVLIALGGWNDSAGNKYS 2410


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 103 FSWSVYAIVVSFMLTTNCISDIMV 32
           F W++  I V  ++   C SDI +
Sbjct: 920 FYWNLLPIAVFILVCATCSSDIQL 943



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 458  LDKCFSFKLNFNYFSSKS 405
            LD  F  K+NF YF  K+
Sbjct: 1252 LDWPFDPKVNFTYFEDKN 1269


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 103 FSWSVYAIVVSFMLTTNCISDIMV 32
           F W++  I V  ++   C SDI +
Sbjct: 920 FYWNLLPIAVFILVCATCSSDIQL 943



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 458  LDKCFSFKLNFNYFSSKS 405
            LD  F  K+NF YF  K+
Sbjct: 1252 LDWPFDPKVNFTYFEDKN 1269


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 405 LSLMSVTMSAGSLPFIPKNNQDSVM*IKQVMF 310
           L  + +++  G++ F    NQD VM I  V+F
Sbjct: 420 LQTLIISLVIGAIYFGQDLNQDGVMNINGVLF 451


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 405 LSLMSVTMSAGSLPFIPKNNQDSVM*IKQVMF 310
           L  + +++  G++ F    NQD VM I  V+F
Sbjct: 420 LQTLIISLVIGAIYFGQDLNQDGVMNINGVLF 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,705
Number of Sequences: 336
Number of extensions: 2038
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)