Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J04
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14390.1 68417.m02219 ankyrin repeat family protein contains ...    28   4.7  
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c...    28   6.1  
At3g60130.1 68416.m06714 glycosyl hydrolase family 1 protein / b...    28   6.1  
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c...    28   6.1  

>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
           Pfam profile: PF00023 ankyrin repeat
          Length = 694

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -2

Query: 387 TMSAGSLPFIPKNNQDSVM*IKQVMFYSKLVCTKFYFXVFLGLIGGWSSSVEQYSSSTIS 208
           +++  S+P  PKNN+D V     ++  + LV T  +   F  + GG++SS      +T++
Sbjct: 502 SLTKPSVPLDPKNNRDYV---NTLLLVAALVATMTFAAGFT-IPGGFNSSAPHLGRATLA 557

Query: 207 LLP 199
             P
Sbjct: 558 TNP 560


>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 280

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 285 FYFXVFLGLIGGWSSSVEQ 229
           F+F VFLGL   WS+SV++
Sbjct: 151 FFFIVFLGLTLSWSASVKK 169


>At3g60130.1 68416.m06714 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (YLS1) contains Pfam PF00232
           : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; similar to amygdalin
           hydrolase isoform AH I precursor (GI:16757966) [Prunus
           serotina]; identical to cDNA YLS1 mRNA for
           beta-glucosidase, partial cds GI:13122279
          Length = 514

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 289 STNQF*IKHNLFYLHHTILIVFRDKWQAT 375
           +T  + + HNL   H   + V+R+K+QAT
Sbjct: 232 ATEPYIVGHNLLLAHGVAVKVYREKYQAT 260


>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 285 FYFXVFLGLIGGWSSSVEQ 229
           F+F VFLGL   WS+SV++
Sbjct: 152 FFFIVFLGLTLSWSASVKK 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,560
Number of Sequences: 28952
Number of extensions: 163781
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)