Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J03
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...   136   2e-33

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  136 bits (330), Expect = 2e-33
 Identities = 76/188 (40%), Positives = 118/188 (62%), Gaps = 18/188 (9%)
 Frame = +3

Query: 129 VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 308
           +++++ RQ + Q+L+  +++SSA M +K L  VT  ESP+VVVLS SMEP+F RGDLLFL
Sbjct: 1   MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL 60

Query: 309 TN----YPE-------------EPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNGTVKFL 437
            N    + E              PV +G+IVV+ +  R IPIVHRV+KL+E  N T   +
Sbjct: 61  DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQT-HLI 119

Query: 438 TKGDNNSVDDRGLYAQXQLWLTKKD-VVGRAXXFXPYVGMVTIYMNEYPKFKFAVLACLA 614
           TKGDNN +DD  ++ +   +L +++ ++G    + PY+GM+TI++ +YP  K+ +L  L 
Sbjct: 120 TKGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLG 179

Query: 615 IYVLXHRE 638
           +  L  +E
Sbjct: 180 LLTLIQKE 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,893
Number of Sequences: 5004
Number of extensions: 52278
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)