Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J03
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)              286   1e-77
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              29   4.2  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       28   7.4  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)              27   9.8  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score =  286 bits (701), Expect = 1e-77
 Identities = 134/158 (84%), Positives = 143/158 (90%)
 Frame = +3

Query: 117 LFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGD 296
           +FDDVRRMNKRQ  YQVL+F +IVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF RGD
Sbjct: 6   MFDDVRRMNKRQLFYQVLNFAIIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFQRGD 65

Query: 297 LLFLTNYPEEPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 476
           LLFLTNY E+P+RVGEIVVFKV GR+IPIVHRVLK+HEK NG +KFLTKGDNNSVDDRGL
Sbjct: 66  LLFLTNYKEDPIRVGEIVVFKVEGREIPIVHRVLKVHEKENGDIKFLTKGDNNSVDDRGL 125

Query: 477 YAQXQLWLTKKDVVGRAXXFXPYVGMVTIYMNEYPKFK 590
           YA  QLWL KKDVVGRA  F PYVGMVTI MN+YPKFK
Sbjct: 126 YAPGQLWLAKKDVVGRARGFVPYVGMVTILMNDYPKFK 163


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = -1

Query: 163 WYMNCRLFIRRTSSNRLSNSC*FNQLFLKEIMQCSVWLVEVLPCCRQLPSP 11
           WY +C     R S ++   S   +  F+  + +  ++ +E+  CC+ +P+P
Sbjct: 89  WYGHCYDQNVRASFDKEGTSKCGDGYFMTGLYRDEIYCIEMFKCCKMVPTP 139


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +3

Query: 135 RMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN 314
           R+ K   + +++  G+ ++  ++I  G+ +     S  VV+L G    A   G +LF+  
Sbjct: 144 RIKKYDMLEKLVIAGLALTVLVIISFGITMQNCFLSIFVVLLYGYYPQAIQTGTVLFINT 203

Query: 315 YPEEPVRVGEIVVFKVXGRDIPI 383
              +     +  V +V GRD+ +
Sbjct: 204 LKTKKFGSPKESVIEVHGRDLTV 226


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 227 YYHQTFPYHQGRRHYHTKA*HLVHELPLVHSPHIIK*TFQQLLI*SVIFKGNNAV--QCL 54
           ++H    +HQ +RH+H +  H   +    H  HII  T   +++ ++I   N  +    +
Sbjct: 236 HHHHKQHHHQQQRHHHHEQHHHQQQQHHHHHEHIII-TNNGIIMNNIIITNNGIIMNNII 294

Query: 53  VS*SFALLPTVAVTN 9
           ++ +  ++  + +TN
Sbjct: 295 ITNNGIIMNNIIITN 309


>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 314 LP*GACPRWRNCCLQSXGPGYPDCSQSI 397
           +P G  PR+  CC +  GPG   C  ++
Sbjct: 411 VPKGVIPRFFRCCSRGVGPGTGGCCAAL 438


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 257 YYYYWAFTSCYYHQTFPYHQGRRHYH 180
           YYYY+ +   YY+  + Y+    HY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYY 134


>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 82  LKEIMQCSVWLVEVLPCCRQLPSPTNP 2
           + ++++C  +L+E+L CC  +  P  P
Sbjct: 133 MNQVLECEFYLLEMLDCCLIIYHPYRP 159


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 337 TRTGSSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIKPFHIIKAEDTIIPKL 170
           +R  S+G ++++    L + G  LP +   +GLS      KPF I KA    IPKL
Sbjct: 202 SRKSSTGLIIQSQNEILKRLGD-LPHNDQPVGLSTFANFAKPF-IHKAPIPNIPKL 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,237
Number of Sequences: 59808
Number of extensions: 407693
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)