Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J03
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...   263   9e-71
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   8.6  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    27   8.6  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score =  263 bits (644), Expect = 9e-71
 Identities = 120/175 (68%), Positives = 145/175 (82%)
 Frame = +3

Query: 114 SLFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRG 293
           ++F ++R+MN RQ  YQ L+F M+VSSALMIWKG+MV+TGS+SP+VVVLSGSMEPAF+RG
Sbjct: 8   AMFSEIRQMNIRQLFYQCLNFAMVVSSALMIWKGMMVITGSDSPVVVVLSGSMEPAFYRG 67

Query: 294 DLLFLTNYPEEPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRG 473
           DLL LTN  E+PVRVG+I VFKV GR+IPIVHRV+K+HEK+    K LTKGDNN VDDRG
Sbjct: 68  DLLLLTNDLEDPVRVGDITVFKVEGREIPIVHRVIKVHEKSADNTKILTKGDNNQVDDRG 127

Query: 474 LYAQXQLWLTKKDVVGRAXXFXPYVGMVTIYMNEYPKFKFAVLACLAIYVLXHRE 638
           LYA  QLWL++ DVVGR     PYVGMVTI MN+YPK K+AVLA L ++VL H+E
Sbjct: 128 LYAPGQLWLSRTDVVGRTKGLLPYVGMVTIIMNDYPKLKYAVLAFLGLFVLLHKE 182


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 EEPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 476
           E P++V  IV+    G D+PI+ R+L   +KN   + FL     + V++  L
Sbjct: 791 ETPLKVKCIVML---GVDLPIIRRILSYLDKNELKMIFLNYDAYSRVEEEEL 839


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = -1

Query: 379 GISRPXTLKTTISPTRTGSSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIKPFHII 200
           G+  P     T +PT   ++   V   + P+  A +    +TTT   +   TT    ++ 
Sbjct: 425 GVIIPKKGGVTTAPTTVATT---VTTGRPPMTSAVTTTTAATTTTTRAATTTTASNTNVC 481

Query: 199 KAE-DTIIPKLNTWYMNCRLFIRRTSSNRLSNSC 101
             + D   P  N    NC LF+   SS   S SC
Sbjct: 482 SGKSDGFYPNSN----NCGLFVLCLSSKSYSMSC 511


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 321 EEPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNG--TVKFLTKGDNNSVDDRG 473
           EE +R G  +VF +     P +H +LK  E+  G  T++  ++  +  + D G
Sbjct: 665 EEAIRNGVTIVFGIIAEKRPDMHDILKYFEEKLGQQTIQISSETADKFMRDHG 717


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 EEPVRVGEIVVFKVXGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 476
           E P++V  IV+    G D+PI+ R+L   +KN   + FL     + V++  L
Sbjct: 791 ETPLKVKCIVML---GVDLPIIRRILSYLDKNELKMIFLNYDAYSRVEEEEL 839


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,492
Number of Sequences: 27780
Number of extensions: 300915
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)