BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P04_F_J02 (412 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 3.1 AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 3.1 AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 4.1 AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 20 9.5 >DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride channel protein. Length = 383 Score = 21.8 bits (44), Expect = 3.1 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -3 Query: 200 LFPSIPQLFSSHSQPAYLG 144 + P P+L+ H P +LG Sbjct: 9 ILPLNPKLYDKHRAPKFLG 27 >AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice variant B protein. Length = 810 Score = 21.8 bits (44), Expect = 3.1 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -3 Query: 332 LDTKKLLLRLSVLPRASDFYKIR 264 LDTKK ++S L +D Y ++ Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401 >AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter transporter-1A protein. Length = 203 Score = 21.4 bits (43), Expect = 4.1 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 15 SCSRFVKTFSNIQNEQRC*LSCWL 86 SC+ + T + + R LSCWL Sbjct: 100 SCNNYWNTKNCVNPYDRDSLSCWL 123 >AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex determiner protein. Length = 385 Score = 20.2 bits (40), Expect = 9.5 Identities = 10/41 (24%), Positives = 19/41 (46%) Frame = +2 Query: 119 RDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNF 241 R+ K+D L KK +EE + + + E +K++ Sbjct: 243 REYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSY 283 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 108,330 Number of Sequences: 438 Number of extensions: 2050 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 10379628 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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