Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J02
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    20   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 200 LFPSIPQLFSSHSQPAYLG 144
           + P  P+L+  H  P +LG
Sbjct: 9   ILPLNPKLYDKHRAPKFLG 27


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 332 LDTKKLLLRLSVLPRASDFYKIR 264
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 15  SCSRFVKTFSNIQNEQRC*LSCWL 86
           SC+ +  T + +    R  LSCWL
Sbjct: 100 SCNNYWNTKNCVNPYDRDSLSCWL 123


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 119 RDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNF 241
           R+  K+D     L    KK +EE   +   + + E  +K++
Sbjct: 243 REYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,330
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)