Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I24
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.51 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   2.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = -1

Query: 294 PPTGIDDSFSRPAAISCST-SLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPST 118
           PP  ID S +  A + CS    P   +I   S   +      LR     A   +V PP  
Sbjct: 29  PPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLR--QVLANGNLVFPPFR 86

Query: 117 ASKY 106
           A  Y
Sbjct: 87  AEDY 90


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 153 SAAAGVVLPPSTASKYA 103
           +AAA  +LPP TA+  A
Sbjct: 131 AAAAAALLPPQTAAMAA 147


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 157 NVSGSWRGLATQHS 116
           ++ G+W G A  HS
Sbjct: 215 DLRGNWAGFADSHS 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,547
Number of Sequences: 336
Number of extensions: 981
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)