Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_I24
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 85 9e-18
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 85 9e-18
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 85 9e-18
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 82 1e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 78 1e-15
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 78 1e-15
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 70 4e-13
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 69 6e-13
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 32 0.12
At1g67140.1 68414.m07638 expressed protein 28 2.0
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 3.4
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 26 6.0
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 26 6.0
At5g40720.1 68418.m04942 expressed protein contains Pfam profile... 26 7.9
At4g22840.1 68417.m03298 bile acid:sodium symporter family prote... 26 7.9
At3g30560.1 68416.m03867 hypothetical protein 26 7.9
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.4 bits (202), Expect = 9e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.4 bits (202), Expect = 9e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.4 bits (202), Expect = 9e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 81.8 bits (193), Expect = 1e-16
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/70 (47%), Positives = 53/70 (75%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ AA+LLAVLGG P+A +++ I+ +VG + D ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/70 (47%), Positives = 53/70 (75%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ AA+LLAVLGG P+A +++ I+ +VG + D ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 269 KLSSMPVGGG 298
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 70.1 bits (164), Expect = 4e-13
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ VAAYLLA L G P+ AD++KI+ SVG E D K+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 269 KLSSMPVGGG 298
K++++ GGG
Sbjct: 61 KMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 69.3 bits (162), Expect = 6e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +2
Query: 89 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 268
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 269 KLSSMPVGG 295
K+S++ GG
Sbjct: 61 KMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +2
Query: 158 EKILSSVGIEADAXKLKKVITELNGKDVE----QLIAAGREKLSSMP 286
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 274 QLLTSGRNKLFNILAVELSDYFLKLXSVSFDTDGAEDLLNVS 149
Q L++GR L+++L L++ S SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 223 LSDYFLKLXSVSFDTDGAEDLLNVSG---SWRGL 131
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 182 IEADAXKLKKVITELNGKDVEQL 250
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 294 PPTGIDDSFSRPAAISCSTSLPLSS 220
PP+ + S S P+ +S STS P SS
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSS 67
>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
PF01697: Domain of unknown function
Length = 583
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 28 VQRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQD 135
V + T+ HY ++V K + RV T A WQ+
Sbjct: 461 VDKSTMVINHYKYQVWDIFKEKFKRRVATYVADWQN 496
>At4g22840.1 68417.m03298 bile acid:sodium symporter family protein
low similarity to SP|Q12908 Ileal sodium/bile acid
cotransporter {Homo sapiens}; contains Pfam profile
PF01758: Sodium Bile acid symporter family
Length = 409
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 252 ISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPP 124
+SC + LS+ TFL+ A A P + + S S A V++ P
Sbjct: 196 VSCVSGAQLSNYATFLTDPALA--PLSIVMTSLSTATAVLVTP 236
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 25.8 bits (54), Expect = 7.9
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = -3
Query: 277 RQLLTSGRNKLFNILAVELSDYFLKLXSVSFDTDGAEDLLNVSGSWRGLATQHSQ*IRGH 98
R+ L + + +L E + K+ + G + LNV+ S G+A+ + R
Sbjct: 1010 RETLKTIHDDWLKMLTTEQKKVYDKIMDAVLNNKGGDICLNVASS--GIASLLLEGGRTA 1067
Query: 97 VTHF---LSPN*HETCNAERITFVVEQTSTSK 11
+ F L+P+ TCN ER + + E + +K
Sbjct: 1068 HSRFGIPLTPHETSTCNMERGSDLAELVTAAK 1099
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,523,882
Number of Sequences: 28952
Number of extensions: 89430
Number of successful extensions: 275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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