Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I23
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   170   1e-43
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.2  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.6  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    27   1.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  170 bits (413), Expect = 1e-43
 Identities = 82/110 (74%), Positives = 96/110 (87%)
 Frame = +2

Query: 137 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 316
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 317 TPCGEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIA 466
           TP GEGSKT + ++M IH  +IDLHSPSEIVKQITSI+IEPGV VEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 134  IEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 268
            IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 896  IEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 110 AAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRS 208
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 254 KLRVKGPVRMPTKILRITTRKTPCGEGSKTXDRFQMXIHXXVIDLHSPSEI 406
           K+ +KGP  +P K+   T  ++P    S + + F+   H  +I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,164
Number of Sequences: 5004
Number of extensions: 36391
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)