Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_I23
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 157 5e-39
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 156 8e-39
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 155 1e-38
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 45 3e-05
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 30 0.93
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.8
07_01_0344 - 2490700-2493249 28 5.0
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 27 8.7
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 157 bits (381), Expect = 5e-39
Identities = 75/121 (61%), Positives = 93/121 (76%)
Frame = +2
Query: 107 AAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
A G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 287 TKILRITTRKTPCGEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIA 466
TK+L ITTRK+PCGEG+ T DRF+ IH VIDL S ++VKQITSI IEPGV VEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 467 D 469
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 156 bits (379), Expect = 8e-39
Identities = 79/124 (63%), Positives = 96/124 (77%), Gaps = 3/124 (2%)
Frame = +2
Query: 107 AAAVXSGKDIEK---PQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPV 277
AAAV G K +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPV
Sbjct: 3 AAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPV 62
Query: 278 RMPTKILRITTRKTPCGEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEV 457
R+PTK+L ITTRK+PCGEG+ T DRF+ IH VIDL S ++VKQITSI IEPGV VEV
Sbjct: 63 RIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEV 122
Query: 458 TIAD 469
TIAD
Sbjct: 123 TIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 155 bits (377), Expect = 1e-38
Identities = 76/121 (62%), Positives = 95/121 (78%)
Frame = +2
Query: 107 AAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 287 TKILRITTRKTPCGEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIA 466
TK+L ITTRK+PCGEG+ T DRF+M +H VIDL S +++VKQITSI IEPGV VEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 467 D 469
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +2
Query: 155 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 334
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSP-HVH 387
Query: 335 SKTXDRFQMXIHXXVIDLHSP-SEIVKQITSINIEPGVXVEVTI 463
+ F++ H +ID+ P ++ + + + + GV VEV +
Sbjct: 388 KDSRFHFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 199 CALAREGLC*PNQWSQETEAACKGPSP 279
C LA EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 172 HQDHSYFTQCALAREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 300
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 171 RWIGETSAWGFSMSLPDXTAAA 106
RWIG++S F++SLP A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 81 SAGIQQATWQPLXCQAKTLRNPRQRSPLSTA--SGSLLLHAMCARSRR 218
SA A W + +A+ +R+PR+ +P +TA + + L A SRR
Sbjct: 313 SAAALHAPWSSVKHRAQIIRSPRRGTPTTTAFRAYNAALAPRAAASRR 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,094
Number of Sequences: 37544
Number of extensions: 276877
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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