Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I23
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   162   1e-40
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   162   1e-40
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   160   6e-40
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   160   6e-40
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    50   9e-07
At3g18310.1 68416.m02330 expressed protein                             27   7.3  
At3g06960.2 68416.m00827 expressed protein                             27   7.3  
At3g06960.1 68416.m00826 expressed protein                             27   7.3  
At5g27220.1 68418.m03247 protein transport protein-related low s...    27   9.6  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  162 bits (393), Expect = 1e-40
 Identities = 73/109 (66%), Positives = 92/109 (84%)
 Frame = +2

Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 326 GEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
           GEG+ T DRF++ +H  VIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  162 bits (393), Expect = 1e-40
 Identities = 73/109 (66%), Positives = 92/109 (84%)
 Frame = +2

Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 326 GEGSKTXDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
           GEG+ T DRF++ +H  VIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  160 bits (388), Expect = 6e-40
 Identities = 72/103 (69%), Positives = 89/103 (86%)
 Frame = +2

Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 344 XDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
            DRF++ +H  VIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  160 bits (388), Expect = 6e-40
 Identities = 72/103 (69%), Positives = 89/103 (86%)
 Frame = +2

Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 344 XDRFQMXIHXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
            DRF++ +H  VIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
 Frame = +2

Query: 107 AAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
           A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    +  GPV +P
Sbjct: 73  ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132

Query: 287 TKILRITTRKTPCGEGSKTXDRFQMXIHXXVID-LHSPSEIVKQITSINIEPGVXVEVTI 463
           TK       K+P          F++  H  +ID L+  ++ +  +  +++  GV VEV +
Sbjct: 133 TKKRIYCVLKSP-HVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191


>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 WSQETEAACKGPSPHANQDPA 300
           W+ +++  C GPSP   +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420


>At3g06960.2 68416.m00827 expressed protein
          Length = 341

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 174 MRWIGETSAWGFSMSLP 124
           MRW+GE   W   MS P
Sbjct: 4   MRWVGEGDIWDLDMSTP 20


>At3g06960.1 68416.m00826 expressed protein
          Length = 479

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 174 MRWIGETSAWGFSMSLP 124
           MRW+GE   W   MS P
Sbjct: 4   MRWVGEGDIWDLDMSTP 20


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 214 LERAH--IA*SKSDPDAVDRGDLCL 146
           ++R H  +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,400,048
Number of Sequences: 28952
Number of extensions: 207519
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)