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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I21
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           98   2e-21
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                27   9.1  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 46/59 (77%), Positives = 49/59 (83%)
 Frame = +3

Query: 255 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPNSNS 431
           KVHGSLARAGKVK QTPKV+        TGRAKR +QYNRRFVNVVQTFGRRRGPNSN+
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 184 KGAPHNDRVRSSSPTAARVRMRS 116
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 34  LQLCSCISEGNRHTSWTSMARSPLVRSRNAFVLL 135
           L+LC C +  N  +S  S+  SP V  + A VLL
Sbjct: 689 LKLCVCSARSNHTSSRISVNYSPNVIGKEAVVLL 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,988,448
Number of Sequences: 59808
Number of extensions: 227642
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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