BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P04_F_I21 (442 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32) 98 2e-21 SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 27 9.1 >SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32) Length = 61 Score = 98.3 bits (234), Expect = 2e-21 Identities = 46/59 (77%), Positives = 49/59 (83%) Frame = +3 Query: 255 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPNSNS 431 KVHGSLARAGKVK QTPKV+ TGRAKR +QYNRRFVNVVQTFGRRRGPNSN+ Sbjct: 2 KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60 >SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1308 Score = 27.1 bits (57), Expect = 6.9 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 184 KGAPHNDRVRSSSPTAARVRMRS 116 +G+PH R R+SSP AR R S Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751 >SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) Length = 1064 Score = 26.6 bits (56), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 34 LQLCSCISEGNRHTSWTSMARSPLVRSRNAFVLL 135 L+LC C + N +S S+ SP V + A VLL Sbjct: 689 LKLCVCSARSNHTSSRISVNYSPNVIGKEAVVLL 722 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,988,448 Number of Sequences: 59808 Number of extensions: 227642 Number of successful extensions: 590 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 859323430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -