Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I21
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    85   3e-17
Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    27   6.0  
AL110479-13|CAB60318.1|  204|Caenorhabditis elegans Hypothetical...    27   8.0  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 40/63 (63%), Positives = 46/63 (73%)
 Frame = +3

Query: 243 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPN 422
           LLGGKVHGSLARAGKV+ QTPKV+         GRA R +QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 423 SNS 431
           SNS
Sbjct: 128 SNS 130


>Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical
           protein C29F3.5 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 340 VFFXFFCCFSTLGVCPLTLPARAKDPCTLP 251
           + F FFC FS  G  P+T P   ++P  +P
Sbjct: 6   IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 341 WPC*AXNSVQQKICQRCAD 397
           WPC   +S ++K+C  C D
Sbjct: 269 WPCFPYSSWKEKLCSECVD 287


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 341 WPC*AXNSVQQKICQRCAD 397
           WPC   +S ++K+C  C D
Sbjct: 231 WPCFPYSSWKEKLCSECVD 249


>AL110479-13|CAB60318.1|  204|Caenorhabditis elegans Hypothetical
           protein Y105C5B.14 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 2   AFTCQAWLIRFYNYAVAYQRAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWSP 181
           A TC+ W+I  +N  V + RA+D R G+       S+Q T  Y        P    +WSP
Sbjct: 111 AGTCENWIIEDWNEKVVF-RAVDPR-GKYLRACLGSNQLTLVYI-------PEPTELWSP 161

Query: 182 F 184
           F
Sbjct: 162 F 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,290,415
Number of Sequences: 27780
Number of extensions: 161725
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)