Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I19
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    26   2.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   2.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   5.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   7.2  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    24   7.2  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    24   9.6  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    24   9.6  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    24   9.6  

>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 204 QSHTLGQRTTCTPPESCSKVXKE*LTNM-HENHQLLIYV 317
           QSH L    + TP  +   + +E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAI-LLEELLSNMLHANHPILDYV 307


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 336 VIYCTIVHKLIVDDFHACWLTIPXSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 160
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 185 NVTNLTSESHLGPTDDLHTSRKLFQS 262
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 151 SLKQEFRAXALKRDESHVRVTPWANGRPAHL 243
           S  + FR     RD+   +  P +N  P HL
Sbjct: 229 SFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 95  CLQALILLLFVVYFYSSKIK 36
           CL   + L+F+ YFY + +K
Sbjct: 117 CLVCTLALIFLTYFYETWVK 136


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 120 VVYVS*TSLPPSAHFVIVR---CLLLFVKNKVEIFLIS 16
           +V+ S  SLPPS+H   ++   C L+F    V   ++S
Sbjct: 578 MVFASSFSLPPSSHTCALQAMYCQLIFSNTSVPSAIVS 615


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 VHKLIVDDFHACWLTIPXSLWN 253
           +H+L  + F ACWL I    +N
Sbjct: 158 IHELASNSFGACWLWIVIDDYN 179


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 282 WLTIPXSLWNSFLEVCR 232
           WL+IP S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,776
Number of Sequences: 5004
Number of extensions: 22829
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)