Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I19
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           56   7e-09
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    30   0.74 
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115...    28   3.0  
02_04_0349 + 22222091-22222639,22222718-22223695                       27   6.9  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 21/48 (43%), Positives = 34/48 (70%)
 Frame = +1

Query: 88  WRQAGLTYINYSNIAAXVLRRSLKQEFRAXALKRDESHVRVTPWANGR 231
           WR AG+TYI YSN+ A ++RR LK+  ++ A  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>12_02_0849 - 23640091-23640279,23640537-23640677,23640756-23642203,
            23642300-23642372,23642452-23642572,23642689-23642791,
            23642979-23643052,23643140-23643285,23643368-23643476,
            23643580-23643704,23643989-23644342,23644440-23644503,
            23644581-23645032
          Length = 1132

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 234  RSSVGP-RCDSDVRFVTFQRLCSKFLL**PAKHXGCDV*VVYVS*TSLPPSAHFVIVRCL 58
            R +V P  C++D+RF  FQ    +FL   P K   C +   Y +   L P  H + V C+
Sbjct: 998  RPAVTPSNCEADMRFSFFQSQWDRFLAPYP-KSDYCIICRSYDAVMQLVPCLHKICVACM 1056

Query: 57   L 55
            +
Sbjct: 1057 M 1057


>01_07_0150 +
           41508546-41508636,41509384-41510343,41511082-41511555,
           41511642-41511736
          Length = 539

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 309 LIVDDFHACWLTIPXSLWNSFLEVCRSSVGPRCDS 205
           ++VDD+  C+ T+   L +S  E C  S    CD+
Sbjct: 157 IVVDDWTKCYGTVQTFLHSSDAESCSDSFKGECDA 191


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 262 TLEQLSGGVQVVRWP 218
           TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,406
Number of Sequences: 37544
Number of extensions: 141100
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)