Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I19
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   29   1.8  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    28   2.3  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             28   3.1  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               27   5.3  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)                   26   9.3  

>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 27   KFQLYF*RIKVNNEQ*QNERLEASWFNLHKLLKHRSQXAS--QVTKAR 164
            +F  YF R K NN    N RLEA +  L KL KH    A+  +V KA+
Sbjct: 1118 QFVDYFNRAKQNN----NARLEAEFKKLFKLSKHHPSEAAKKRVNKAK 1161


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 246 LEVCRSSVGPRCDSDVRFVTFQRLCSK 166
           L  C SSV PR D+D R +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 342 NSVIYCTIVHKLIVDDFHAC-WLTIPXSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 175
           +SV  C  VH + V     C +  +  SLW  F E+     G RC S  +FVT +RL
Sbjct: 315 SSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 246 LEVCRSSVGPRCDSDVRFVTFQRLCSK 166
           L  C SSV PR D+D R +TF   C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 246 LEVCRSSVGPRCDSDVRFVTFQRLCSK 166
           L  C SSV PR D+D R +TF   C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 246 LEVCRSSVGPRCDSDVRFVTFQRLCS 169
           L  C SSV PR D+D R +TF+  C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249


>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 336 VIYCTIVHKLIVDDFHACWLTIPXSLWNSFLEVCRSSVG 220
           VI+ T+++    D+ +  +L+IP  +W + + +  +  G
Sbjct: 336 VIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 166 FRAXALKRDESHVRVTPWANGRPAH 240
           FR   L   +S VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 288 ACWLTIPXSLWNSFLEVCRSSVGPRC 211
           AC+L IP ++ N  ++ C++ V  +C
Sbjct: 69  ACYLDIPGNMVNEEVQACKAKVFSQC 94


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 166 FRAXALKRDESHVRVTPWANGRPAH 240
           F A  L   +S VR +PWA  RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856


>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
          Length = 483

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 166 FRAXALKRDESHVRVTPWANGRPAH 240
           F A  L   +S VR +PWA  RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,570
Number of Sequences: 59808
Number of extensions: 164726
Number of successful extensions: 387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)