Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I19
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri...    62   2e-10
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    29   1.1  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    27   4.4  
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.4  
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.4  

>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
           identical to ATP synthase epsilon chain, mitochondrial
           SP:Q96253 from [Arabidopsis thaliana]
          Length = 70

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 25/56 (44%), Positives = 39/56 (69%)
 Frame = +1

Query: 67  NNNKMSAWRQAGLTYINYSNIAAXVLRRSLKQEFRAXALKRDESHVRVTPWANGRP 234
           +N  +  WR AG+TYI+YSNI A ++R  LK+  +A AL R++ H  ++ WA+G+P
Sbjct: 3   SNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 234 CTPPESCSKVXKE*LTNMHENHQLLIY 314
           C PP SCSK+  + +T +   HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 258 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 175
           WNS   +C+S VG  C SD   V   RL
Sbjct: 67  WNSTNHICKSWVGVTCTSDGTSVHALRL 94


>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 479

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 262 TLEQLSGGVQVVRWP 218
           TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395


>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 309

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 262 TLEQLSGGVQVVRWP 218
           TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,776
Number of Sequences: 28952
Number of extensions: 116803
Number of successful extensions: 251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)