Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I17
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    76   5e-15
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.14 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.58 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.1  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 41/110 (37%), Positives = 61/110 (55%)
 Frame = +2

Query: 317 PDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAAD 496
           PDFS Y+ K T D +          +  +Y +                  F++S SA+AD
Sbjct: 51  PDFSEYQTKSTGDRS----------RVISYAMVGTMGALTAAGAQATVHDFLASWSASAD 100

Query: 497 VLALAKIEIXLAEIPQGKSVTFKWRGKPLFIRHRTAXEISTXKAVPVDTL 646
           VLA++K E+ L++IP+GK++  KW+GKP+FIRHRT  EI    +V + TL
Sbjct: 101 VLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTL 150


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +1

Query: 106 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 234
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 58  YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 216
           +R   +S +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +1

Query: 40  NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 198
           NY  ++ RN+ +N+ +  G       +S     ++  P++   T S  +         PL
Sbjct: 49  NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108

Query: 199 PKTSTVETLHGSLPIQG 249
           P TST  T   S+P  G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 160 VPTPSEKTVVLPLPKTSTVETLHGSLPIQGFEGQSRNXSTCPSTFRS 300
           VP  S  +  +P+P TST  T   S P+          ++ P T  S
Sbjct: 251 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNS 297



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 148 PLVVVPTPSEKTVVLPLPKTSTVETLHGSLPIQGFEGQSRNXS-TCPSTFRS 300
           P+    T S  T   PLP TST  T   S+P  G    S   + T P T  S
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS 257


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 188 TTVFSEGVGTTTRGFRLLATTW 123
           T +F  G+G + +G+  +A TW
Sbjct: 19  TVIFLHGLGDSGQGWSFMANTW 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,905
Number of Sequences: 5004
Number of extensions: 48655
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)