Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_I17
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0792 + 19693957-19694146,19695614-19696260 70 2e-12
02_04_0023 - 19000591-19001234,19003322-19003496 69 2e-12
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 31 1.0
04_03_0621 - 18102243-18104249 31 1.0
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 29 4.2
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 28 5.6
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 28 7.4
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 7.4
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +2
Query: 389 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIXLAEIPQGKSVTFKW 568
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 569 RGKPLFIRHRTAXEISTXKAVPVDTL 646
RGKP+FIR RT +I+ +V V +L
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSL 199
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +2
Query: 389 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIXLAEIPQGKSVTFKW 568
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 569 RGKPLFIRHRTAXEISTXKAVPVDTL 646
RGKP+FIR RT +I+ +V + +L
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSL 193
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 VVANSLKPLVVVPTPSE-KTVVLPLPKTSTVETLHGSLPIQGFE 255
+V+ L+P P+P++ +T +LP+PK + V G + + FE
Sbjct: 385 IVSTRLEPAKAQPSPADQRTDILPMPKLTQVTETAGWMATRAFE 428
>04_03_0621 - 18102243-18104249
Length = 668
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 130 VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSLPIQGFEG 258
+A SL+ + + PT + + P+T+TV+T H L G G
Sbjct: 23 IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLLMKVGHSG 65
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 298 SETYLGRYXSSCFDLQSPESAGIHAKFPQLKFLARAGRPFSRR 170
SET++ RY F Q PE H K +K + A F RR
Sbjct: 212 SETFVSRYSGHIFPYQRPEIYLGHLKQFMIKEIKEATNNFDRR 254
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPK-TSTVETLHGSLPIQGF 252
YF+ S Q++A SL+ L V + TVV P+ + T+ V L S+ + GF
Sbjct: 380 YFRGSLQLIACSLRTLAVSFALAVYTVVAPVDRWTALVVCLTASV-VMGF 428
>02_05_1346 -
35831261-35831371,35831609-35831779,35831850-35831888,
35831987-35832049,35832616-35832679,35832709-35832778,
35832866-35832934,35833101-35833186,35833670-35833800,
35834021-35834083,35834166-35834211,35834542-35834618,
35834690-35834724,35835480-35835542,35835632-35835719,
35836027-35836077,35836201-35836269
Length = 431
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 221 LCMDPCRFRALKVKAGTX-VPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQS 397
+ PC R L V A + QVR T Y D A K TS+ ID+ S
Sbjct: 1 MARSPCDLRILLVAAAAAFIYIQVRLFSTQSHYADRLAQAEKSENQCTSQLRSLIDQVSS 60
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 88 AGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTS 210
AG L+P SS + S L +P+P T + PLP +S
Sbjct: 218 AGLLSPPAMSSAALSPMSTSSLSPLPSPMSSTALSPLPPSS 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,992
Number of Sequences: 37544
Number of extensions: 327520
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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